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Subject:

Re: Unable to run 3D PASL processing using BASIL

From:

Ashwati Vipin <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Thu, 25 Aug 2022 04:19:24 +0100

Content-Type:

multipart/mixed

Parts/Attachments:
Parts/Attachments

text/plain (15 lines) , Screenshot 2022-08-25 at 11.02.51 AM.png (15 lines) , Screenshot 2022-08-25 at 11.03.04 AM.png (15 lines) , Screenshot 2022-08-25 at 11.03.13 AM.png (15 lines) , Screenshot 2022-08-25 at 11.03.23 AM.png (15 lines) , runlog.txt (1 lines) , logfile (1 lines) 

Hi Michael,

Thanks so much for your response. I ran the analyses again with the "Well-mixed" and "None" options. I also went ahead to make it white paper compatible. Unfortunately I still get similar errors. I've attached the screenshots again as well as the run log. Is there something wrong in the way the ASL data is being read - does the ASL data view look alright (seemed alright to me)? Could you please advise? I'm quite lost. All the perfusion.txt files are blank.

Best,
Ashwati

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{\colortbl;\red255\green255\blue255;}
{\*\expandedcolortbl;;}
\paperw11900\paperh16840\margl1440\margr1440\vieww11520\viewh8400\viewkind0
\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0

\f0\fs24 \cf0 /usr/local/fsl/bin/oxford_asl -i /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_0001_v01_ASL3D.nii --iaf diff --ibf rpt --bolus 0.7 --rpts 8 --tis 1.99 --fslanat /Users/ashwativipin/Desktop/BASIL_3DASL/struc.anat -c /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_0001_v01_PD.nii --cmethod voxel --tr 6 --cgain 1 -o /Users/ashwativipin/Desktop/BASIL_3DASL --bat 0 --t1 1.65 --t1b 1.65 --alpha 0.98 --spatial --fixbolus --artoff --wp\
rm: /Users/ashwativipin/Desktop/BASIL_3DASL/logfile: No such file or directory\
oxford_asl -i /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_0001_v01_ASL3D.nii --iaf diff --ibf rpt --bolus 0.7 --rpts 8 --tis 1.99 --fslanat /Users/ashwativipin/Desktop/BASIL_3DASL/struc.anat -c /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_0001_v01_PD.nii --cmethod voxel --tr 6 --cgain 1 -o /Users/ashwativipin/Desktop/BASIL_3DASL --bat 0 --t1 1.65 --t1b 1.65 --alpha 0.98 --spatial --fixbolus --artoff --wp\
OXFORD_ASL - running\
Version: v4.0.27-dirty Tue Jul 13 10:09:25 2021\
Input file: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_0001_v01_ASL3D.nii\
Saving results in natve (ASL aquisition) space to /Users/ashwativipin/Desktop/BASIL_3DASL/native_space\
Saving results in structural space to /Users/ashwativipin/Desktop/BASIL_3DASL/struct_space\
Analysis in white paper mode\
Pre-processing\
Using structural images (bias corrected) from fsl_anat: /Users/ashwativipin/Desktop/BASIL_3DASL/struc.anat\
Standard brain is: /usr/local/fsl/data/standard/MNI152_T1_2mm\
Structural to standard transformation warp: /Users/ashwativipin/Desktop/BASIL_3DASL/struc.anat/T1_to_MNI_nonlin_coeff.nii.gz\
Number of TIs in list: 1\
TIs list: --ti1=1.99\
Input ASL format is: diff\
Input block format is: rpt\
Number of voxels is:589824\
Number of repeats in data is:8\
Outputting ASL data mean at each TI\
Done.\
Label-control difference data provided: /Users/ashwativipin/Desktop/BASIL_3DASL/BIOC_0001_v01_ASL3D.nii\
Number of inversion times: 1\
Number of timepoints in data: 8\
Number of repeats in data: 8\
Operating in Single TI mode\
1.99 1.99 1.99 1.99 1.99 1.99 1.99 1.99\
1.99\
Using FSL_ANAT outputs at: /Users/ashwativipin/Desktop/BASIL_3DASL/struc.anat\
Bias field extracted from /Users/ashwativipin/Desktop/BASIL_3DASL/struc.anat sucessfully\
Defaulting to brain extracted calibration image as initial registration reference\
Using brain extracted calibration image as initial registration reference\
Creating WMseg for BBR registration\
Performing registration\
Using /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/calib_brain as base for inital registration\
Initial registration is FLIRT only\
Performing registration\
ASL_REG\
Input file is: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/calib_brain\
Registration MAIN stage (FLIRT)\
Tidying up\
ASL_REG - Done.\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/tmp_asl_reg/lowtohigh"\
Generating calibration image in structural space\
Creating mask\
Generating dilated mask for initial BASIL runs\
T1: 1.65\
T1b: 1.65\
Bolus duration: 0.7\
Setting up BASIL\
pASL model\
Fixed bolus duration\
Variable arterial arrival time\
Setting prior/initial (tissue/gray matter) bolus arrival time to 0\
Instructing BASIL to use automated spatial smoothing\
BASIL options (/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil_options.txt):\
----\
#FABBER options created by Oxford_asl --t1=1.65 --t1b=1.65 --tau=0.7 --bat=0 --save-model-fit\
----\
Calling BASIL on data - conventional perusion image\
Initial run of BASIL on data where we have avareged all repeats at each TI\
Run time basil options:\
--spatial\
---\
Creating output directory: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil\
STEP 1: VB - Tissue\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step1/logfile\
 0%Image Exception : #3 :: Mask of different size used in matrix()\
NEWMAT exception caught in fabber:\
  Mask of different size used in matrix()\
\
Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step1/logfile\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step1/finalMVN"\
STEP 2: Spatial VB Tissue - init with STEP 1\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/logfile\
 0%Image Exception : #3 :: Mask of different size used in matrix()\
NEWMAT exception caught in fabber:\
  Mask of different size used in matrix()\
\
Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/logfile\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/finalMVN"\
End.\
Using BASIL step /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/mean_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/mean_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97112 Abort trap: 6           fslmaths $\{finalstep\}/mean_ftiss -thr 0 $2/ftiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/mean_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/mean_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97113 Abort trap: 6           fslmaths $\{finalstep\}/mean_delttiss -thr 0 $2/delttiss\
Fabber variance calculator\
Working in /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2\
Calculating variance for: ftiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=640, y=640, z=35, vols=1\
FabberRunDataNewimage::Voxel size: x=0.34375mm, y=0.34375mm, z=3.9mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/finalMVN (File is invalid or does not exist)\
Calculating variance for: delttiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=640, y=640, z=35, vols=1\
FabberRunDataNewimage::Voxel size: x=0.34375mm, y=0.34375mm, z=3.9mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/finalMVN (File is invalid or does not exist)\
Done.\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/var_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/var_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97124 Abort trap: 6           fslmaths $\{finalstep\}/var_ftiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_ftiss $2/var_ftiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/var_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/var_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97125 Abort trap: 6           fslmaths $\{finalstep\}/var_delttiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_delttiss $2/var_delttiss\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/basil/step2/finalMVN"\
Main run of BASIL on ASL data\
Run time basil options:\
--spatial\
---\
Initial MVN for BASIL is: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/finalMVN\
Creating output directory: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/init/finalMVN"\
STEP 1: VB - Tissue - init with STEP 0\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step1/logfile\
 0%Image Exception : #3 :: Mask of different size used in matrix()\
NEWMAT exception caught in fabber:\
  Mask of different size used in matrix()\
\
Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step1/logfile\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step1/finalMVN"\
STEP 2: Spatial VB Tissue - init with STEP 1\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/logfile\
 0%Image Exception : #3 :: Mask of different size used in matrix()\
NEWMAT exception caught in fabber:\
  Mask of different size used in matrix()\
\
Final logfile: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/logfile\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/finalMVN"\
End.\
Using BASIL step /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/mean_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/mean_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97205 Abort trap: 6           fslmaths $\{finalstep\}/mean_ftiss -thr 0 $2/ftiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/mean_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/mean_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97206 Abort trap: 6           fslmaths $\{finalstep\}/mean_delttiss -thr 0 $2/delttiss\
Fabber variance calculator\
Working in /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2\
Calculating variance for: ftiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=640, y=640, z=35, vols=1\
FabberRunDataNewimage::Voxel size: x=0.34375mm, y=0.34375mm, z=3.9mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/finalMVN (File is invalid or does not exist)\
Calculating variance for: delttiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=640, y=640, z=35, vols=1\
FabberRunDataNewimage::Voxel size: x=0.34375mm, y=0.34375mm, z=3.9mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/finalMVN (File is invalid or does not exist)\
Done.\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/var_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/var_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97219 Abort trap: 6           fslmaths $\{finalstep\}/var_ftiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_ftiss $2/var_ftiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/var_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/var_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 97220 Abort trap: 6           fslmaths $\{finalstep\}/var_delttiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_delttiss $2/var_delttiss\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/basil/step2/finalMVN"\
Performing final registration\
Performing registration\
ASL_REG\
Input file is: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/ftiss\
Registration FINAL stage (BBR)\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/ftiss\
/usr/local/fsl/bin/asl_reg: line 385: 97254 Abort trap: 6           fslmaths $infile -mas $mask $tempdir/asldata_brain\
'/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/mask.nii.gz' and '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/mask.nii.gz' are the same file\
Running BBR\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Could not open matrix file /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/low2high_final.mat\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/asldata_brain\
/usr/local/fsl/bin/epi_reg: line 390: 97483 Abort trap: 6           $FSLDIR/bin/applywarp -i $\{vepi\} -r $\{vrefhead\} -o $\{vout\} --premat=$\{vout\}.mat --interp=spline\
BBR end\
Saving FINAL output\
cp: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/low2high_final.mat: No such file or directory\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_sf0nykyf_asl_reg/low2high_final"\
'/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/tissseg.nii.gz' and '/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/tissseg.nii.gz' are the same file\
Tidying up\
ASL_REG - Done.\
Generating calibration image in structural space\
Generating analysis mask from final structural registration\
WARNING: Final analysis mask contains 100107 voxels that were not in original model fitting mask\
\
WARNING:: Inconsistent orientations for individual images in pipeline!\
          Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!\
\
Image Exception : #3 :: Attempted to multiply images of different sizes\
libc++abi: terminating with uncaught exception of type std::runtime_error: Attempted to multiply images of different sizes\
/usr/local/fsl/bin/oxford_asl: line 2338: 97704 Abort trap: 6           fslmaths $tempdir/pvgm_inasl -thr 0.1 -mas $tempdir/mask -bin $tempdir/gmmask\
\
WARNING:: Inconsistent orientations for individual images in pipeline!\
          Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!\
\
Image Exception : #3 :: Attempted to multiply images of different sizes\
libc++abi: terminating with uncaught exception of type std::runtime_error: Attempted to multiply images of different sizes\
/usr/local/fsl/bin/oxford_asl: line 2338: 97705 Abort trap: 6           fslmaths $tempdir/pvwm_inasl -thr 0.1 -mas $tempdir/mask -bin $tempdir/wmmask\
\
WARNING:: Inconsistent orientations for individual images in pipeline!\
          Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!\
\
Image Exception : #3 :: Attempted to multiply images of different sizes\
libc++abi: terminating with uncaught exception of type std::runtime_error: Attempted to multiply images of different sizes\
/usr/local/fsl/bin/oxford_asl: line 2338: 97706 Abort trap: 6           fslmaths $tempdir/pvgm_inasl -thr $gm_thresh -mas $tempdir/mask -bin $tempdir/gmmask_pure\
\
WARNING:: Inconsistent orientations for individual images in pipeline!\
          Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!\
\
Image Exception : #3 :: Attempted to multiply images of different sizes\
libc++abi: terminating with uncaught exception of type std::runtime_error: Attempted to multiply images of different sizes\
/usr/local/fsl/bin/oxford_asl: line 2338: 97709 Abort trap: 6           fslmaths $tempdir/pvwm_inasl -thr $wm_thresh -mas $tempdir/mask -bin $tempdir/wmmask_pure\
Using user-supplied structural->standard space warp to generate cortical GM/WM masks\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/gmmask_pure\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/gmmask_pure\
/usr/local/fsl/bin/oxford_asl: line 2338: 97840 Abort trap: 6           fslmaths $tempdir/gmmask_pure -mas $tempdir/cort_mask_asl $tempdir/gmmask_pure_cort\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/wmmask_pure\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/wmmask_pure\
/usr/local/fsl/bin/oxford_asl: line 2338: 97841 Abort trap: 6           fslmaths $tempdir/wmmask_pure -mas $tempdir/cort_mask_asl $tempdir/wmmask_pure_cereb\
T1t (for calibration): 1.3\
Calibration is voxelwise\
Number of voxels is:100123\
Number of repeats in data is:1\
Start extrapolation!\
Done.\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss"\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
/usr/local/fsl/bin/oxford_asl: line 265: 97932 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Mean perfusion in gm is\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/std_space///perfusion\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/std_space///perfusion\
/usr/local/fsl/bin/oxford_asl: line 347: 97935 Abort trap: 6           fslmaths $outdir/std_space/$subdir/$parname -div $normval $outdir/std_space/$subdir/$\{parname\}_norm\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
/usr/local/fsl/bin/oxford_asl: line 347: 97936 Abort trap: 6           fslmaths $outdir/native_space/$subdir/$parname -div $normval $outdir/native_space/$subdir/$\{parname\}_norm\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/struct_space///perfusion\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/struct_space///perfusion\
/usr/local/fsl/bin/oxford_asl: line 347: 97937 Abort trap: 6           fslmaths $outdir/struct_space/$subdir/$parname -div $normval $outdir/struct_space/$subdir/$\{parname\}_norm\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss"\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///delttiss\
/usr/local/fsl/bin/oxford_asl: line 265: 97944 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Mean arrival in gm is\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion\
Mean perfusion in wm is\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///arrival\
Mean arrival in wm is\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss"\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
/usr/local/fsl/bin/oxford_asl: line 265: 97952 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
(standard_in) 1: parse error\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/std_space///perfusion_var\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/std_space///perfusion_var\
/usr/local/fsl/bin/oxford_asl: line 371: 97959 Abort trap: 6           fslmaths $outdir/std_space/$subdir/$\{parname\}_var -div $normval $outdir/std_space/$subdir/$\{parname\}_var_norm\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_var\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_var\
/usr/local/fsl/bin/oxford_asl: line 371: 97960 Abort trap: 6           fslmaths $outdir/native_space/$subdir/$\{parname\}_var -div $normval $outdir/native_space/$subdir/$\{parname\}_var_norm\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/struct_space///perfusion_var\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/struct_space///perfusion_var\
/usr/local/fsl/bin/oxford_asl: line 371: 97961 Abort trap: 6           fslmaths $outdir/struct_space/$subdir/$\{parname\}_var -div $normval $outdir/struct_space/$subdir/$\{parname\}_var_norm\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss"\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_delttiss\
/usr/local/fsl/bin/oxford_asl: line 265: 97967 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss\
/usr/local/fsl/bin/oxford_asl: line 307: 97971 Abort trap: 6           fslmaths $tempdir/$subdir/$param -div $Moval -mul $multiplier $tempdir/$subdir/$\{param\}_calib\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib"\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///ftiss_calib\
/usr/local/fsl/bin/oxford_asl: line 265: 97976 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Mean perfusion_calib in gm is\
Image Exception : #63 :: No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Image Exception : #22 :: Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Failed to read volume /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Error : No image files match: /Users/ashwativipin/Desktop/BASIL_3DASL/native_space///perfusion_calib\
Mean perfusion_calib in wm is\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss\
/usr/local/fsl/bin/oxford_asl: line 307: 97981 Abort trap: 6           fslmaths $tempdir/$subdir/$param -div $Moval -mul $multiplier $tempdir/$subdir/$\{param\}_calib\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib"\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Image Exception : #63 :: No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Image Exception : #22 :: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
Error : No image files match: /var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl///var_ftiss_calib\
/usr/local/fsl/bin/oxford_asl: line 265: 97988 Abort trap: 6           applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/gmmask"\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/wmmask"\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/gmmask_pure"\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/wmmask_pure"\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/gmmask_pure_cort"\
Could not find a supported file with prefix "/var/folders/wv/h2bhrv4j0c5ckrhq35k5xtph0000gn/T/fsl_9s58_a0f_ox_asl/wmmask_pure_cereb"\
Output is /Users/ashwativipin/Desktop/BASIL_3DASL/\
OXFORD_ASL - done.\
\
Return code: 0\
\
}



########################################################################



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