Dear all,
I'm running probtrackx2 in parallel on my cpu, by using gnu parallel. I run ROI x ROI using 10 ROIs.
I noticed that the last ROI is missing / I obtain a 9 x 9 fdt_network_matrix instead of 10 x 10.
Does anyone have the solution? Please find the text file I feed into gnu parallel below.
Thanks very much!
Best
Hans
/usr/local/fsl/bin/probtrackx2 --network -x /mnt/e/DTI_fsl/sub-p1539/tractography/StateList.txt -l --onewaycondition -c 0.2 -S 2000 --steplength=0.5 -P 5000 --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --forcedir --opd -s /mnt/e/DTI_fsl/sub-p1539/tractography.bedpostX/merged -m /mnt/e/DTI_fsl/sub-p1539/tractography.bedpostX/nodif_brain_mask --dir=/mnt/e/DTI_fsl/sub-p1539/tractography/output_ROItoROI;
/usr/local/fsl/bin/probtrackx2 --network -x /mnt/e/DTI_fsl/sub-p1554/tractography/StateList.txt -l --onewaycondition -c 0.2 -S 2000 --steplength=0.5 -P 5000 --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --forcedir --opd -s /mnt/e/DTI_fsl/sub-p1554/tractography.bedpostX/merged -m /mnt/e/DTI_fsl/sub-p1554/tractography.bedpostX/nodif_brain_mask --dir=/mnt/e/DTI_fsl/sub-p1554/tractography/output_ROItoROI;
/usr/local/fsl/bin/probtrackx2 --network -x /mnt/e/DTI_fsl/sub-p1562/tractography/StateList.txt -l --onewaycondition -c 0.2 -S 2000 --steplength=0.5 -P 5000 --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --forcedir --opd -s /mnt/e/DTI_fsl/sub-p1562/tractography.bedpostX/merged -m /mnt/e/DTI_fsl/sub-p1562/tractography.bedpostX/nodif_brain_mask --dir=/mnt/e/DTI_fsl/sub-p1562/tractography/output_ROItoROI;
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