Hello FSL,
I am just following up to these questions I posted a week or so ago. I am hoping someone with more expertise can offer guidance on the hcp asl pipeline?
As mentioned before, I am trying to run this on the hcp mb pCASL sequence.
I had a few questions about some of the parameters.
Where do you find the following parameters for these sequences that the pipeline calls?
- MT-correction scaling factors
- Gradient coefficients
- interpolation and core defaults OK to use? If not, how to determine which one to use?
- vascular territory atlas with labels. Is that available somewhere within FSL?
Lastly, the acpc-aligned dc-restored structural image - does that require special registration? Or is a T1 image fine to be used here?
Thank you again in advance,
Danielle
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