Hi
What is the content of list.txt (can you post the result of running “cat list.txt” ) ?
Cheers
Saad
> On 21 Apr 2022, at 03:26, SUBSCRIBE FSL Anonymous <[log in to unmask]> wrote:
>
> Hello,
>
> I'm trying to run eddy squad and I'm getting the following error:
>
> Generating group database...
> Traceback (most recent call last):
> File "/usr/local/fsl/fslpython/envs/fslpython/bin/eddy_squad", line 42, in <module>
> main(args.list, args.grouping, args.group_db, args.update, args.output_dir)
> File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.8/site-packages/eddy_qc/SQUAD/squad.py", line 87, in main
> db = squad_db.main(out_dir + '/group_db.json', 'w', sList)
> File "/usr/local/fsl/fslpython/envs/fslpython/lib/python3.8/site-packages/eddy_qc/SQUAD/squad_db.py", line 42, in main
> raise ValueError(qc_json + ' does not appear to be a valid qc.json file')
> ValueError: 1/qc.json does not appear to be a valid qc.json file
>
> I'm using FSL tools via Ubuntu 18.04 on Windows 10. I'm not sure what this error is referring to. I ran quad for each subject, and then made a list of the folders (list.txt) and put that in the command "eddy_squad list.txt".
>
> Any help is much appreciated!
>
> Thank you
>
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