SPM Users,
Thank you for taking the time to read my concerns. I am trying to reslice the SUIT cerebellar atlas ('Lobules-SUIT.nii') into native space, however, when I try this, I get erroneous outputs. I've attached a couple screenshots of the output overlaid on the reference image.
I have the intensity normalized output (nu.nii) from Freesurfer in LPI orientation, that I'm using as my T1 image. Currently, I am using spm12 and SUIT3.5 MATLAB toolbox to process these.
I'm able to run through the entire pipeline ( suit_isolate_seg -> suit_normalize_dartel -> suit_reslice_dartel_inv ) without MATLAB throwing errors, however, the output from the inverse reslicing of Lobules-SUIT.nii in SUIT space to nu.nii in native space does not look good.
If anyone has any suggestions or questions that I could answer, I would appreciate them.
Thank you so much for your time,
Kenneth Rostowsky
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