Dear Patrick,
you can use the defaults in CAT12. However, you cannot use any additional data such as T1, FLAIR or field maps.
Best,
Christian
On Thu, 6 May 2021 13:14:42 +0000, Patrick <[log in to unmask]> wrote:
>Dear SPM/CAT Experts,
>
>I have downloaded the raw unprocessed T1w MPR images from the HCP database. I am interested in using CAT12 for performing segmentation and volumetric/surface measure estimation. Are there any special considerations or pipeline changes that should be done for this? Among the included files, there is also a bias field and a fieldmap but I am not sure if there is any way to use them within the CAT framework.
>
>Any suggestions in this regard will be much welcome.
>
>
>Thanks and Regards
>PB
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