Dear Jonathan,
I am not familiar with the LST toolbox but just looked at its code, and
in particular tbx_cfg_LST.m (and output of ps_LST_lga.m,
ps_LST_lesfill.m and ps_LST_thresholding.m). It seems that the
implementation of batch dependencies is not complete or correct.
Could you describe exactly which modules you have been using as well as
the dependency settings?
Best regards,
Guillaume.
On 09/02/2021 02:18, Jonathan Taylor wrote:
> Hello,
>
> I have not been able to solve this issue as yet, it is strange that the batch will not continue after LGA segmentation, when it does produce the probability lesion map at the break point and then using this .nii file specified directly in the batch allows it to complete as expected in a subsequent run.
>
> Does anyone have a solution to this problem? I can't figure out why the process generates the required file, but will not provide it to the following steps in the batch process.
>
--
Guillaume Flandin, PhD
Wellcome Centre for Human Neuroimaging
UCL Queen Square Institute of Neurology
London WC1N 3BG
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