Hi,
I am working with MRI macaque data and I want to make the anatomical processing. I will like to go ahead with each of the steps by commands (to adapt it for the monkey's images). And I'm completely blocked at the very beginning. I have already averaged the T1 images, corrected the labels and reoriented to standard space. Now I'm trying to remove neck and lower head from my T1. But, by some reason, robustfov doesn't work, though I added the size of the brain (-b optional argument). The output it is exactly the same as the input image. Therefore, I was trying to use fslroi, but I can't figure out how to calculate xmin, xsize etc... I have seen how to do it in other post (https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=FSL;7ff29174.0810). I have done several tries but I don't catch it, sorry. I will really appreciate if you can be more explicit. Thank you in advance.
Vanessa
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