Hi Duarte,
To make packages load automatically, you should be able to add the appropriate lines to ~/.octaverc
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> Hi again,
>
> I tried to run fix again, but I got the same error. When I opened logMatlab.txt, the error is very similar. I noticed that everytime I open octave, I need to first write "pkg load signal", before calling aryule function. Is it normal?
>
> Best regards,
> Duarte Saraiva
> On 1 Dec 2020, at 16:20, Matthew Webster <[log in to unmask]> wrote:
>
> Hi Duarte,
> It looks like octave can’t find the aryule function ( which should be included with the signal toolbox ). Can you check if this function is visible, when you start octave normally from the command line?
>
> Kind regards
> Matthew
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
>> On 1 Dec 2020, at 16:07, Duarte Saraiva <[log in to unmask]> wrote:
>>
>> Hi FSL experts,
>>
>> I am trying to use FIX with octave but I am getting some problems.
>>
>> I have download octave and R, and I think that all packages are installed. (I attached to this email those informations).
>> I have already read the README file inside FIX, and after that I did some changes in settings.sh (attached to this email).
>>
>> In a simple try (following this https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX/UserGuide ) I run fix, as you can see below:
>>
>>
>> duartesaraiva@DESKTOP-AG7SO1E:~$
>> fix/fix 0003001.ica fix/training_files/Standard.RData 20
>>
>> FIX Feature
>> extraction for Melodic output directory: 0003001.ica
>>
>> create
>> edge masks
>>
>> run FAST
>> registration
>> of standard space masks
>>
>> extract
>> features
>>
>> FIX Classifying
>> components in Melodic directory: 0003001.ica using training file: fix/training_files/Standard.RData and threshold 20
>>
>> FIX features
>> not already generated, so creating them now.
>>
>> FIX Feature
>> extraction for Melodic output directory: 0003001.ica
>>
>> create
>> edge masks
>>
>> run FAST
>> registration
>> of standard space masks
>>
>> extract
>> features
>>
>> No valid
>> labelling file specified
>>
>>
>>
>> But I got this error! Then, I explored this website (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX/FAQ ), and attached to this email, I send
>> logMatlab.txt and .fix_2b_predict.log
>>
>> They have got errors, but I don't really know how to solve those. Can you help me?
>>
>> Best regards,
>>
>> Duarte Saraiva
>>
>>
>>
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>> <octave packages.PNG><R packages.PNG><settings.sh><.fix_2b_predict.log><logMatlab.txt>
>
>
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