Hi,
I was running Bayesian Polishing (after the training with 4000 particles and that went fine) but it stopped within an hour. I got the following message
" === RELION MPI setup ===
+ Number of MPI processes = 2
+ Master (0) runs on host = c110279
+ Slave 1 runs on host = c110279
=================
+ Reading CtfRefine/job125/particles_ctf_refine.star...
+ Using movie pixel size from MotionCorr/job002/Movies/FoilHole_17543938_Data_17536531_17536533_20201118_131940-423055.star: 0.53 A
+ Using coord. pixel size from MotionCorr/job002/Movies/FoilHole_17543938_Data_17536531_17536533_20201118_131940-423055.star: 0.53 A
+ Using dose per frame from MotionCorr/job002/Movies/FoilHole_17543938_Data_17536531_17536533_20201118_131940-423055.star: 1.4 e/A^2
+ Reading references ...
+ The names of the reference half maps and the mask were taken from the PostProcess STAR file.
- Half map 1: Refine3D/job117/run_half1_class001_unfil.mrc
- Half map 2: Refine3D/job117/run_half2_class001_unfil.mrc
- Mask: MaskCreate/job121/mask.mrc
+ Masking references ...
+ Transforming references ...
+ Initializing motion estimator ...
+ using parameters from: Polish/job131/note.txt
s_vel: 0, s_div: 5000, s_acc: 2
+ Performing loop over micrographs ...
0.52/2.19 hrs ..............~~(,_,">
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 57465 RUNNING AT c110279
= EXIT CODE: 9
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Killed (signal 9)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions"
I started the the program again with 3 MPI process but got the same message. Is there anything that can be done to solve the issue?
-Victor
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