Dear Hampus,
I assume (and hope) that you have a rather old CAT12 version. I can remeber of issues with that, but this is a long time ago. Please report your CAT12 release number.
Best,
Christian
On Thu, 20 Aug 2020 13:42:40 +0200, Hampus Grönvall <[log in to unmask]> wrote:
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>--></style></head><body lang=SV><div class=WordSection1><p class=MsoNormal>Dear experts,</p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>I have used SPM12 and CAT12 to segment a large sample of MRI images for analysis following the recomended pipeline in the CAT12 manual while creating a custom DARTEL template. Upon inspecting the results, the proprtions of white matter, gray matter and cerebrospinal fluid seem wrong though:</p><p class=MsoNormal><o:p> </o:p></p><table class=MsoNormalTable border=0 cellpadding=0><thead><tr style='page-break-inside:avoid'><td colspan=10 style='border:none;border-bottom:solid #333333 1.0pt;padding:3.0pt 6.0pt 3.0pt 0cm'><p class=MsoNormal><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>Descriptives<b><o:p></o:p></b></span></p></td></tr><tr><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td><td style='padding:.75pt .75pt .75pt .75pt'></td></tr><tr style='page-break-inside:avoid'><td colspan=2 style='border:none;border-bottom:solid #333333 1.0pt;padding:3.0pt 6.0pt 3.0pt 6.0pt'><p class=MsoNormal align=center style='text-align:center'><b><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'> <o:p></o:p></span></b></p></td><td colspan=2 style='border:none;border-bottom:solid #333333 1.0pt;padding:3.0pt 6.0pt 3.0pt 6.0pt'><p class=MsoNormal align=center style='text-align:center'><b><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>TIV<o:p></o:p></span></b></p></td><td colspan=2 style='border:none;border-bottom:solid #333333 1.0pt;padding:3.0pt 6.0pt 3.0pt 6.0pt'><p class=MsoNormal align=center style='text-align:center'><b><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>CSF<o:p></o:p></span></b></p></td><td colspan=2 style='border:none;border-bottom:solid #333333 1.0pt;padding:3.0pt 6.0pt 3.0pt 6.0pt'><p class=MsoNormal align=center style='text-align:center'><b><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>GM<o:p></o:p></span></b></p></td><td colspan=2 style='border:none;border-bottom:solid #333333 1.0pt;padding:3.0pt 6.0pt 3.0pt 6.0pt'><p class=MsoNormal align=center style='text-align:center'><b><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>WM<o:p></o:p></span></b></p></td></tr></thead><tr style='page-break-inside:avoid'><td style='padding:6.0pt 0cm 1.5pt 6.0pt'><p class=MsoNormal><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>Mean<o:p></o:p></span></p></td><td style='padding:6.0pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:6.0pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>1509<o:p></o:p></span></p></td><td style='padding:6.0pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:6.0pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>735<o:p></o:p></span></p></td><td style='padding:6.0pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:6.0pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>504<o:p></o:p></span></p></td><td style='padding:6.0pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:6.0pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>269<o:p></o:p></span></p></td><td style='padding:6.0pt 6.0pt 1.5pt 1.5pt'></td></tr><tr style='page-break-inside:avoid'><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>Standard deviation<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>139<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>78.6<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>56.8<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>52.6<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td></tr><tr style='page-break-inside:avoid'><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>Minimum<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>1134<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>500<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>335<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td><td style='padding:1.5pt 0cm 1.5pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>150<o:p></o:p></span></p></td><td style='padding:1.5pt 6.0pt 1.5pt 1.5pt'></td></tr><tr style='page-break-inside:avoid'><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 0cm 6.0pt 6.0pt'><p class=MsoNormal><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>Maximum<o:p></o:p></span></p></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 6.0pt 6.0pt 1.5pt'></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 0cm 6.0pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>1912<o:p></o:p></span></p></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 6.0pt 6.0pt 1.5pt'></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 0cm 6.0pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>972<o:p></o:p></span></p></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 6.0pt 6.0pt 1.5pt'></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 0cm 6.0pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>729<o:p></o:p></span></p></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 6.0pt 6.0pt 1.5pt'></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 0cm 6.0pt 6.0pt'><p class=MsoNormal align=right style='text-align:right'><span style='font-size:9.0pt;font-family:"Segoe UI",sans-serif;color:#333333'>485<o:p></o:p></span></p></td><td style='border:none;border-bottom:solid #333333 1.5pt;padding:1.5pt 6.0pt 6.0pt 1.5pt'></td></tr></table><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>It seems to me that the WM and CSF values have been swapped, but this is what the reported values are. Is this an issue with labelling in the reports, or does anyone have any other ideas of what might be wrong? </p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Regards</p><p class=MsoNormal>Hampus</p></div></body></html>
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