There seems to be a list of the 7.0 programs (and documentation!) still available:
http://www.ccp4.ac.uk/html/FUNCTION.html
I hope this is not going away!
eab
On 07/07/2020 12:09 PM, Tim Gruene wrote:
> Dear Kelvin,
>
> the command 'ls $CBIN' lists the majority of CCP4 programs on your
> system. This probably even works under Windows 10, since the powershell
> acts like a linux/unix shell.
>
> Best regards,
> Tim
>
> On Tue, 7 Jul 2020 16:00:18 +0000
> Lau Kelvin <[log in to unmask]> wrote:
>
>> Ah I see! Great I can run it that way
>>
>> And yes, Eleanor, after I realized that list was gone, I was
>> panicking that there are some random things I used to do with those
>> programs would no longer be possible. Good to know that the command
>> line versions are still there in the 7.1 distro.
>>
>> Best,
>>
>> Kelvin
>>
>> --
>> Kelvin Lau
>> https://people.epfl.ch/kelvin.lau
>>
>> Protein production and structure core facility - PTPSP
>> EPFL SV PTECH PTPSP
>> AI 2146 (Bâtiment AI)
>> Station 19
>> CH-1015 Lausanne
>> Switzerland
>> Email: [log in to unmask]<mailto:[log in to unmask]>
>> Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
>> If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
>>
>>
>> On 07.07.20, 15:51, "CCP4 bulletin board on behalf of Christian Roth"
>> <[log in to unmask]<mailto:[log in to unmask]> on behalf of
>> [log in to unmask]<mailto:[log in to unmask]>> wrote:
>>
>> ....yes Eleanor is right. command line still works.:-)
>> fft is also in 7.1 distribution.
>>
>>
>>
>> On Tue, Jul 7, 2020 at 3:43 PM Eleanor Dodson
>> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>> Oh Lau - how I miss that list! But if you just run fft online it is
>> still distributed..wombat:Downloads eleanor$
>>
>>
>> fft hklin .... mapout ....
>>
>> LABIN FP= and so on..
>>
>>
>> On Tue, 7 Jul 2020 at 14:22, Christian Roth
>> <[log in to unmask]<mailto:[log in to unmask]>>
>> wrote: Hi Kelvin, well fft as single program is kind of not longer
>> supported as is not ccp4i. In i2 internally, as well in communication
>> with mg or coot, everything is done using map coefficients. Their are
>> two options: First via i2: Use the unusual map coefficients Task and
>> choose not to compare maps, but to generate the map coefficients plus
>> a map (button is in Advanced tab) the standard grid parameters can be
>> changed, but are actually optimized already. Second just save the map
>> out of Coot (Export map)
>>
>> To avoid redundancy, the old fft task was discontinued. i2 works with
>> coefficients, which generates smaller files and Coot provides all the
>> functions to generate the map and is its own gui.
>>
>> Hope that explains a bit why things are how they are now.
>>
>> Cheers
>> Christian
>>
>> On Tue, Jul 7, 2020 at 1:56 PM Lau Kelvin
>> <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hi Christian,
>>
>> I was in particular looking for the fft program (I couldn’t find that
>> using the method you described) just to convert an mtz into a .map.
>> Before in version 7.0 I could just browse all programs, now it seems
>> like I cannot do that (other than using the filter, and some seem to
>> be missing)
>>
>> At the end I just used mtz2map in phenix.
>>
>> --
>> Kelvin Lau
>> https://people.epfl.ch/kelvin.lau
>>
>> Protein production and structure core facility - PTPSP
>> EPFL SV PTECH PTPSP
>> AI 2146 (Bâtiment AI)
>> Station 19
>> CH-1015 Lausanne
>> Switzerland
>> Email: [log in to unmask]<mailto:[log in to unmask]>
>> Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
>> If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
>>
>>
>> On 06.07.20, 13:34, "Christian Roth"
>> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>>
>> Hi Kelvin,
>> not quite sure if I understand you correctly, but if you press the
>> Task Manager button you get on the right sight a list of topics
>> (import data, Molecular Replacemnt etc.) each point can be open up
>> like a file tree to see all programs or pipelines available. You can
>> search with the search field (Filter) on top for specific program
>> names. Does that help?
>>
>> Cheers
>> Christian
>>
>> On Mon, Jul 6, 2020 at 1:15 PM Lau Kelvin
>> <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello,
>>
>> I am looking for a way to find the list of programs accessible using
>> the new 7.1 CCP4I2 interface? Is this still possible or do I have to
>> revert back to version 7.0?
>>
>> Best regards,
>>
>> Kelvin
>>
>> --
>> Kelvin Lau
>> https://people.epfl.ch/kelvin.lau
>>
>> Protein production and structure core facility - PTPSP
>> EPFL SV PTECH PTPSP
>> AI 2146 (Bâtiment AI)
>> Station 19
>> CH-1015 Lausanne
>> Switzerland
>> Email: [log in to unmask]<mailto:[log in to unmask]>
>> Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
>> If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
>>
>>
>> ________________________________
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>>
>> ________________________________
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>>
>> ________________________________
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>>
>> ########################################################################
>>
>> To unsubscribe from the CCP4BB list, click the following link:
>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>>
>> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a
>> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are
>> available at https://www.jiscmail.ac.uk/policyandsecurity/
>
>
>
########################################################################
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
|