Dear Kelvin,
the command 'ls $CBIN' lists the majority of CCP4 programs on your
system. This probably even works under Windows 10, since the powershell
acts like a linux/unix shell.
Best regards,
Tim
On Tue, 7 Jul 2020 16:00:18 +0000
Lau Kelvin <[log in to unmask]> wrote:
> Ah I see! Great I can run it that way
>
> And yes, Eleanor, after I realized that list was gone, I was
> panicking that there are some random things I used to do with those
> programs would no longer be possible. Good to know that the command
> line versions are still there in the 7.1 distro.
>
> Best,
>
> Kelvin
>
> --
> Kelvin Lau
> https://people.epfl.ch/kelvin.lau
>
> Protein production and structure core facility - PTPSP
> EPFL SV PTECH PTPSP
> AI 2146 (Bâtiment AI)
> Station 19
> CH-1015 Lausanne
> Switzerland
> Email: [log in to unmask]<mailto:[log in to unmask]>
> Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
> If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
>
>
> On 07.07.20, 15:51, "CCP4 bulletin board on behalf of Christian Roth"
> <[log in to unmask]<mailto:[log in to unmask]> on behalf of
> [log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> ....yes Eleanor is right. command line still works.:-)
> fft is also in 7.1 distribution.
>
>
>
> On Tue, Jul 7, 2020 at 3:43 PM Eleanor Dodson
> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
> Oh Lau - how I miss that list! But if you just run fft online it is
> still distributed..wombat:Downloads eleanor$
>
>
> fft hklin .... mapout ....
>
> LABIN FP= and so on..
>
>
> On Tue, 7 Jul 2020 at 14:22, Christian Roth
> <[log in to unmask]<mailto:[log in to unmask]>>
> wrote: Hi Kelvin, well fft as single program is kind of not longer
> supported as is not ccp4i. In i2 internally, as well in communication
> with mg or coot, everything is done using map coefficients. Their are
> two options: First via i2: Use the unusual map coefficients Task and
> choose not to compare maps, but to generate the map coefficients plus
> a map (button is in Advanced tab) the standard grid parameters can be
> changed, but are actually optimized already. Second just save the map
> out of Coot (Export map)
>
> To avoid redundancy, the old fft task was discontinued. i2 works with
> coefficients, which generates smaller files and Coot provides all the
> functions to generate the map and is its own gui.
>
> Hope that explains a bit why things are how they are now.
>
> Cheers
> Christian
>
> On Tue, Jul 7, 2020 at 1:56 PM Lau Kelvin
> <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hi Christian,
>
> I was in particular looking for the fft program (I couldn’t find that
> using the method you described) just to convert an mtz into a .map.
> Before in version 7.0 I could just browse all programs, now it seems
> like I cannot do that (other than using the filter, and some seem to
> be missing)
>
> At the end I just used mtz2map in phenix.
>
> --
> Kelvin Lau
> https://people.epfl.ch/kelvin.lau
>
> Protein production and structure core facility - PTPSP
> EPFL SV PTECH PTPSP
> AI 2146 (Bâtiment AI)
> Station 19
> CH-1015 Lausanne
> Switzerland
> Email: [log in to unmask]<mailto:[log in to unmask]>
> Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
> If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
>
>
> On 06.07.20, 13:34, "Christian Roth"
> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Hi Kelvin,
> not quite sure if I understand you correctly, but if you press the
> Task Manager button you get on the right sight a list of topics
> (import data, Molecular Replacemnt etc.) each point can be open up
> like a file tree to see all programs or pipelines available. You can
> search with the search field (Filter) on top for specific program
> names. Does that help?
>
> Cheers
> Christian
>
> On Mon, Jul 6, 2020 at 1:15 PM Lau Kelvin
> <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello,
>
> I am looking for a way to find the list of programs accessible using
> the new 7.1 CCP4I2 interface? Is this still possible or do I have to
> revert back to version 7.0?
>
> Best regards,
>
> Kelvin
>
> --
> Kelvin Lau
> https://people.epfl.ch/kelvin.lau
>
> Protein production and structure core facility - PTPSP
> EPFL SV PTECH PTPSP
> AI 2146 (Bâtiment AI)
> Station 19
> CH-1015 Lausanne
> Switzerland
> Email: [log in to unmask]<mailto:[log in to unmask]>
> Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
> If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
>
>
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--
--
Tim Gruene
Head of the Centre for X-ray Structure Analysis
Faculty of Chemistry
University of Vienna
Phone: +43-1-4277-70202
GPG Key ID = A46BEE1A
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