Thank you very much for your help Paul! :)
I've reinstalled FSL using the Windows Subsystem for Linux and I no longer have the issue.
####
Hi Daan,
Others have solved this problem by making sure the VM has the latest version of mesa installed. If you are using Ubuntu, you can do this:
sudo add-apt-repository ppa:ubuntu-x-swat/updates
sudo apt-get update
sudo apt-get dist-upgrade
Or if you are using CentOS, you should be able to run yum update.
It is also worth ensuring that you have the latest version of FSLeyes installed in the VM: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSLeyes#Install_as_part_of_FSL_.28recommended.29
Alternately, if you are using Windows 10, and don't mind re-installing FSL, the Windows Subsystem for Linux is usually a less painful option for installing/using FSL:
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/Windows
In addition to ensuring that you have the latest GL drivers and version of FSLeyes installed, you may also need to use the Override image data range option, explained here: https://users.fmrib.ox.ac.uk/~paulmc/fsleyes/userdoc/latest/overlays.html#volume
Paul
#####
That's odd - it ended up as an attachment. Thanks for helping Paul.
Dear all, I sporadically have to use FSLVm on a Windows PC, but I'm having issues using FSLeyes on that machine. When I try to display a CT image over an anatomical image, the former image is treated as if it consist entirely of 0s. Strangely, FSLeyes is able to read the data correctly: the bottom right corner shows the correct value for each selected voxel. It also correctly identifies where the image is 'out of bounds'. I've tried converting the image's data format to different formats (e.g. to INT16 or FLOAT64; using fslmaths). This worked for one image, but not for all. Does anyone have ideas how to solve this problem? Many thanks, Daan
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1
This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
|