Hi,
I also get the same error message using MacOS Catalina. It would be helpful if someone could respond to this, as it appears to be a common issue when installing FSL with the latest MacOS. Most of FSL seems to work fine, however, fsleyes is not installed as this relies on the python environment being compiled which fails.
Please see error messages below. Any assistance with this would be greatly appreciated.
Kind Regards,
Will
# FAILURE TO CREATE FSL ENVIRON
[OK] FSL software installed.
Performing post install tasks
Checking for X11 windowing system (required for FSL GUIs).
[OK] X11 (required for GUIs) found
Stage 1
By installing this python distribution you agree to the license terms in
/usr/local/fsl/fslpython/LICENSE.txt
100%
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 188: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 189: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 190: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 191: /usr/local/fsl/fslpython/bin/conda: No such file or directory
Stage 2
100%
Failed to create FSL Python environment - see /var/folders/n2/cj_9dg5n1xzd4cb2ms1pvysrm9k595/T/fslpythonXXXX.BUuWNXS9/fslpython_miniconda_installer.log for details
Post install setup failed
Creating Application links...
[OK] /Applications links created/updated
[OK] Post installation setup complete
# VIEWING THE LOG
cat /var/folders/n2/cj_9dg5n1xzd4cb2ms1pvysrm9k595/T/fslpythonXXXX.BUuWNXS9/fslpython_miniconda_installer.log
Installing FSL conda distribution into /usr/local/fsl/fslpython
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
^M 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0^M 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0^M 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 203: /usr/local/fsl/fslpython/bin/conda: No such file or directory
# I TRIED TO RE-INSTALL FSLPYTHON. THE BELOW DID NOT WORK
sudo $FSLDIR/etc/fslconf/fslpython_install.sh -f $FSLDIR
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