Dear FSL community!
I am trying to use eddyqc (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddyqc/UsersGuide) - however, the output is always incomplete.
Folder contains: qc.json, qc.pdf, avg_b*.png, avg_b0_pe*.png, vdm.png
Folder misses: cnr*.png, eddy_msr.txt, vols_no_outliers.txt
Code:
eddy_openmp --imain=DTI --mask=hifi_b0_brain_mask --acqp=acqparams.txt --index=index.txt --bvecs=bvec --bvals=bval --topup=topup_results --out=c_1021_DTI_eddy_corrected --cnr_maps --repol --mb=4
eddy_quad c_1021_DTI_eddy_corrected -idx index.txt -par acqparams.txt -m hifi_b0_brain_mask -b bval -f topup_field -g bvec -o c_1021_quad_qc
Any ideas about this problem?
Best regards,
Ida Schulze Kalthoff
Humboldt-Universität Berlin
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