Hi everyone,
I compared the FSL MNI template (located in $FSLDIR/data/standard/) and the original MNI template that I downloaded from the MNI's website (ICBM 2009c Nonlinear Asymmetric), and the two templates seem to be flipped relative to one other.
I've attached a screenshot to illustrate this. Both templates have LAS orientation. The FSL template was already in LAS, but the original MNI template was in RAS and so I reoriented it to LAS.
It seems that even though they have the same orientation, they are mirror images. In the screenshot, the notch in the premotor cortex (circled in red) is in the left hemisphere in the FSL MNI template, but the same notch is in the right hemisphere in the original MNI template.
Am I missing something obvious here? I can't make sense of it.
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