Dear Bethany,
you can try the new beta version of CAT12.7, which should reveal a more stable segmentation for those cases:
https://upload.uni-jena.de/data/5e74cbc6ed9ec1.26600932/cat12_r1589.zip
Best,
Christian
On Thu, 19 Mar 2020 00:17:55 +0000, Bethany Sussman <[log in to unmask]> wrote:
>Dear SPM experts,
>
>I am currently using CAT12 to segment clinical brains for analysis. So far, it has worked beautifully. I've come to one brain, however, where I am getting this error in the report:
>
>------------------------------------------------------------------------
>CAT Preprocessing error for rT1W:
>------------------------------------------------------------------------
>AMAP estimated untypical tissue peaks that point to an
>error in the preprocessing before the AMAP segmentation.
>------------------------------------------------------------------------
> 128 - cat_main_amap
> 405 - cat_main
> 786 - cat_run_job
> 15 - cat_run_newcatch
> 720 - run_job
> 434 - cat_run
>------------------------------------------------------------------------
>
>
>I've checked the rT1W and don't think I can see something that is glaringly off.
>
>Is there a recommended troubleshooting pipeline you can recommend? I have not gotten this error on any other scans while using the same preprocessing protocol.
>
>Thank you,
>
>Bethany
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