Hi experts,
I have ran the preprocessing of my data using fnirt as the final step for normalizing to standard space. Although my data ("prefiltered_func_data.nii.gz") seems to be warped to standard space, it does not seem to be registered to the standard MNI. That is to say, if I open both the "prefiltered_func_data.nii.gz" and the Standard MNI template, they do not overlap.
Here's one subject:
https://www.dropbox.com/s/dq7k3uvlbp48d0y/ch2better.png?dl=0
Here's the output from the preprocessing report which seems to show they are registered:
https://www.dropbox.com/s/5hg8uzf2rfp6dfy/example_func2standard.png?dl=0
Is this an error? Because when I run the stats, the generated cope.nii and pe.nii are also registered to the "prefiltered_func_data.nii.gz" and not the standard.
PLEASE HELP.
Thank you,
Avi
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