Dear all,
I am publishing a database that's composed of homo and herero- DNA
transmembrane complexes of 714 human proteins please see the attached
list if you have EM map that has no models for it or low-resolution map
please get in touch:
1- you have a high-quality model since all the models built manually.
2- you get a free model and possibly involved in the publication.
looking forwards to hearing from all,
With kind regards,
Ali,
University of Cambridge,
Department of Biochemisty
Prof Sir Blundell Group
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gene_id,uniprot_id,gene_name
25,P00519,ABL1
27,P42684,ABL2
90,Q04771,ACVR1
92,P27037,ACVR2A
207,P31749,AKT1
208,P31751,AKT2
217,P05091,ALDH2
238,Q9UM73,ALK
286,P16157,ANK1
324,P25054,APC
330,Q13489,BIRC3
355,P25445,FAS
367,P10275,AR
369,P10398,ARAF
387,P61586,RHOA
394,Q13017,ARHGAP5
399,Q15669,RHOH
405,P27540,ARNT
463,Q15911,ZFHX3
466,P18846,ATF1
471,P31939,ATIC
472,Q13315,ATM
476,P05023,ATP1A1
492,Q16720,ATP2B3
545,Q13535,ATR
546,P46100,ATRX
567,P61769,B2M
580,Q99728,BARD1
581,Q07812,BAX
595,P24385,CCND1
596,P10415,BCL2
602,P20749,BCL3
604,P41182,BCL6
605,Q4VC05,BCL7A
607,O00512,BCL9
608,Q02223,TNFRSF17
613,P11274,BCR
639,O75626,PRDM1
641,P54132,BLM
653,P22003,BMP5
657,P36894,BMPR1A
668,P58012,FOXL2
672,P38398,BRCA1
673,P15056,BRAF
675,P51587,BRCA2
694,P62324,BTG1
695,Q06187,BTK
701,O60566,BUB1B
776,Q01668,CACNA1D
811,P27797,CALR
833,P49589,CARS
836,P42574,CASP3
841,Q14790,CASP8
842,P55211,CASP9
861,Q01196,RUNX1
862,Q06455,RUNX1T1
863,O75081,CBFA2T3
865,Q13951,CBFB
867,P22681,CBL
868,Q13191,CBLB
892,P24863,CCNC
894,P30279,CCND2
896,P30281,CCND3
898,P24864,CCNE1
940,P10747,CD28
972,P04233,CD74
973,P11912,CD79A
974,P40259,CD79B
999,P12830,CDH1
1008,Q9Y6N8,CDH10
1009,P55287,CDH11
1015,Q12864,CDH17
1019,P11802,CDK4
1021,Q00534,CDK6
1026,P38936,CDKN1A
1027,P46527,CDKN1B
1029,P42771,CDKN2A
1031,P42773,CDKN2C
1045,Q99626,CDX2
1050,P49715,CEBPA
1106,O14647,CHD2
1108,Q14839,CHD4
1213,Q00610,CLTC
1233,P51679,CCR4
1236,P32248,CCR7
1277,P02452,COL1A1
1280,P02458,COL2A1
1281,P02461,COL3A1
1316,Q99612,KLF6
1345,P09669,COX6C
1385,P16220,CREB1
1387,Q92793,CREBBP
1436,P07333,CSF1R
1441,Q99062,CSF3R
1496,P26232,CTNNA2
1499,P35222,CTNNB1
1500,O60716,CTNND1
1501,Q9UQB3,CTNND2
1523,P39880,CUX1
1540,Q9NQC7,CYLD
1558,P10632,CYP2C8
1616,Q9UER7,DAXX
1630,P43146,DCC
1639,Q14203,DCTN1
1643,Q92466,DDB2
1649,P35638,DDIT3
1654,O00571,DDX3X
1655,P17844,DDX5
1656,P26196,DDX6
1662,Q13206,DDX10
1785,P50570,DNM2
1788,Q9Y6K1,DNMT3A
1879,Q9UH73,EBF1
1956,P00533,EGFR
1964,P47813,EIF1AX
1974,Q14240,EIF4A2
1999,P78545,ELF3
2000,Q99607,ELF4
2005,P28324,ELK4
2033,Q09472,EP300
2034,Q99814,EPAS1
2042,P29320,EPHA3
2045,Q15375,EPHA7
2060,P42566,EPS15
2064,P04626,ERBB2
2065,P21860,ERBB3
2066,Q15303,ERBB4
2068,P18074,ERCC2
2071,P19447,ERCC3
2072,Q92889,ERCC4
2073,P28715,ERCC5
2078,P11308,ERG
2099,P03372,ESR1
2115,P50549,ETV1
2118,P43268,ETV4
2119,P41161,ETV5
2120,P41212,ETV6
2122,Q03112,MECOM
2130,Q01844,EWSR1
2131,Q16394,EXT1
2132,Q93063,EXT2
2146,Q15910,EZH2
2175,O15360,FANCA
2176,Q00597,FANCC
2177,Q9BXW9,FANCD2
2178,Q9HB96,FANCE
2181,O95573,ACSL3
2188,Q9NPI8,FANCF
2189,O15287,FANCG
2195,Q14517,FAT1
2199,P98095,FBLN2
2213,P31994,FCGR2B
2237,P39748,FEN1
2242,P07332,FES
2260,P11362,FGFR1
2261,P22607,FGFR3
2262,P78333,GPC5
2263,P21802,FGFR2
2264,P22455,FGFR4
2271,P07954,FH
2272,P49789,FHIT
2308,Q12778,FOXO1
2309,O43524,FOXO3
2313,Q01543,FLI1
2316,P21333,FLNA
2322,P36888,FLT3
2324,P35916,FLT4
2475,P42345,MTOR
2521,P35637,FUS
2531,Q06136,KDSR
2623,P15976,GATA1
2624,P23769,GATA2
2625,P23771,GATA3
2719,P51654,GPC3
2735,P08151,GLI1
2767,P29992,GNA11
2776,P50148,GNAQ
2778,Q5JWF2,GNAS
2903,Q12879,GRIN2A
2913,Q14832,GRM3
2956,P52701,MSH6
3020,P84243,H3F3A
3021,P84243,H3F3B
3084,Q02297,NRG1
3091,Q16665,HIF1A
3092,O00291,HIP1
3105,P04439,HLA-A
3110,P50219,MNX1
3131,Q16534,HLF
3159,P17096,HMGA1
3169,P55317,FOXA1
3181,P22626,HNRNPA2B1
3195,P31314,TLX1
3205,P31269,HOXA9
3207,P31270,HOXA11
3209,P31271,HOXA13
3227,O43248,HOXC11
3229,P31276,HOXC13
3237,P31277,HOXD11
3239,P35453,HOXD13
3265,P01112,HRAS
3320,P07900,HSP90AA1
3326,P08238,HSP90AB1
3337,P25685,DNAJB1
3371,P24821,TNC
3399,Q02535,ID3
3417,O75874,IDH1
3418,P48735,IDH2
3551,O14920,IKBKB
3558,P60568,IL2
3572,P40189,IL6ST
3575,P16871,IL7R
3646,P60228,EIF3E
3662,Q15306,IRF4
3685,P06756,ITGAV
3702,Q08881,ITK
3716,P23458,JAK1
3717,O60674,JAK2
3718,P52333,JAK3
3725,P05412,JUN
3762,P48544,KCNJ5
3791,P35968,KDR
3799,P33176,KIF5B
3815,P10721,KIT
3817,P20151,KLK2
3845,P01116,KRAS
3895,Q86UP2,KTN1
3899,P51826,AFF3
3927,Q14847,LASP1
3932,P06239,LCK
3936,P13796,LCP1
3977,P42702,LIFR
4000,P02545,LMNA
4004,P25800,LMO1
4005,P25791,LMO2
4026,Q93052,LPP
4066,P12980,LYL1
4087,Q15796,SMAD2
4088,P84022,SMAD3
4089,Q13485,SMAD4
4094,O75444,MAF
4149,P61244,MAX
4193,Q00987,MDM2
4194,O15151,MDM4
4214,Q13233,MAP3K1
4221,O00255,MEN1
4233,P08581,MET
4255,P16455,MGMT
4261,P33076,CIITA
4286,O75030,MITF
4291,P58340,MLF1
4292,P40692,MLH1
4297,Q03164,KMT2A
4298,Q03111,MLLT1
4299,P51825,AFF1
4300,P42568,MLLT3
4301,P55196,AFDN
4302,P55198,MLLT6
4303,P98177,FOXO4
4330,Q10571,MN1
4352,P40238,MPL
4436,P43246,MSH2
4478,P26038,MSN
4515,P56278,MTCP1
4582,P15941,MUC1
4585,Q99102,MUC4
4595,Q9UIF7,MUTYH
4602,P10242,MYB
4609,P01106,MYC
4610,P12524,MYCL
4613,P04198,MYCN
4615,Q99836,MYD88
4627,P35579,MYH9
4629,P35749,MYH11
4644,Q9Y4I1,MYO5A
4654,P15172,MYOD1
4665,Q15742,NAB2
4666,Q13765,NACA
4683,O60934,NBN
4763,P21359,NF1
4771,P35240,NF2
4773,Q13469,NFATC2
4780,Q16236,NFE2L2
4781,O00712,NFIB
4791,Q00653,NFKB2
4794,O00221,NFKBIE
4841,Q15233,NONO
4849,O75175,CNOT3
4851,P46531,NOTCH1
4853,Q04721,NOTCH2
4869,P06748,NPM1
4893,P01111,NRAS
4913,P78549,NTHL1
4914,P04629,NTRK1
4916,Q16288,NTRK3
4921,Q16832,DDR2
4926,Q14980,NUMA1
4928,P52948,NUP98
4958,Q99983,OMD
5049,P68402,PAFAH1B2
5077,P23760,PAX3
5079,Q02548,PAX5
5081,P23759,PAX7
5087,P40424,PBX1
5093,Q15365,PCBP1
5108,Q15154,PCM1
5155,P01127,PDGFB
5156,P16234,PDGFRA
5159,P09619,PDGFRB
5187,O15534,PER1
5290,P42336,PIK3CA
5291,P42338,PIK3CB
5292,P11309,PIM1
5295,P27986,PIK3R1
5324,Q6DJT9,PLAG1
5335,P19174,PLCG1
5371,P29590,PML
5378,P54277,PMS1
5395,P54278,PMS2
5396,P54821,PRRX1
5413,Q99719,SEPTIN5
5424,P28340,POLD1
5426,Q07864,POLE
5428,P54098,POLG
5450,Q16633,POU2AF1
5460,Q01860,POU5F1
5468,P37231,PPARG
5518,P30153,PPP2R1A
5537,O00743,PPP6C
5546,Q92733,PRCC
5551,P14222,PRF1
5566,P17612,PRKACA
5573,P10644,PRKAR1A
5579,P05771,PRKCB
5594,P28482,MAPK1
5604,Q02750,MAP2K1
5605,P36507,MAP2K2
5727,Q13635,PTCH1
5728,P60484,PTEN
5753,Q13882,PTK6
5777,P29350,PTPN6
5781,Q06124,PTPN11
5783,Q12923,PTPN13
5787,P23467,PTPRB
5788,P08575,PTPRC
5789,P23468,PTPRD
5796,Q15262,PTPRK
5879,P63000,RAC1
5884,O75943,RAD17
5885,O60216,RAD21
5890,O15315,RAD51B
5894,P04049,RAF1
5900,Q12967,RALGDS
5903,P49792,RANBP2
5910,P52306,RAP1GDS1
5914,P10276,RARA
5925,P06400,RB1
5927,P29375,KDM5A
5966,Q04864,REL
5979,P07949,RET
5987,P14373,TRIM27
6000,P49802,RGS7
6092,Q9HCK4,ROBO2
6098,P08922,ROS1
6125,P46777,RPL5
6134,P27635,RPL10
6146,P35268,RPL22
6184,P04843,RPN1
6249,P30622,CLIP1
6278,P31151,S100A7
6385,P31431,SDC4
6389,P31040,SDHA
6390,P21912,SDHB
6391,Q99643,SDHC
6392,O14521,SDHD
6416,P45985,MAP2K4
6418,Q01105,SET
6421,P23246,SFPQ
6424,Q6FHJ7,SFRP4
6427,Q01130,SRSF2
6428,P84103,SRSF3
6446,O00141,SGK1
6455,Q99961,SH3GL1
6491,Q15468,STIL
6495,Q15475,SIX1
6497,P12755,SKI
6597,P51532,SMARCA4
6598,Q12824,SMARCB1
6602,Q96GM5,SMARCD1
6605,Q969G3,SMARCE1
6608,Q99835,SMO
6657,P48431,SOX2
6714,P12931,SRC
6756,Q16384,SSX1
6757,Q16385,SSX2; SSX2B
6759,O60224,SSX4; SSX4B
6760,Q15532,SS18
6774,P40763,STAT3
6777,P51692,STAT5B
6778,P42226,STAT6
6794,Q15831,STK11
6801,O43815,STRN
6850,P43405,SYK
6886,P17542,TAL1
6887,Q16559,TAL2
6917,P23193,TCEA1
6926,O15119,TBX3
6927,P20823,HNF1A
6929,P15923,TCF3
6934,Q9NQB0,TCF7L2
6935,P37275,ZEB1
6938,Q99081,TCF12
7006,P42680,TEC
7015,O14746,TERT
7030,P19532,TFE3
7037,P02786,TFRC
7048,P37173,TGFBR2
7080,P43699,NKX2-1
7113,O15393,TMPRSS2
7128,P21580,TNFAIP3
7150,P11387,TOP1
7157,P04637,TP53
7170,P06753,TPM3
7171,P67936,TPM4
7175,P12270,TPR
7248,Q92574,TSC1
7249,P49815,TSC2
7253,P16473,TSHR
7307,Q01081,U2AF1
7403,O15550,KDM6A
7409,P15498,VAV1
7428,P40337,VHL
7430,P15311,EZR
7454,P42768,WAS
7468,O96028,NSD2
7486,Q14191,WRN
7490,P19544,WT1
7507,P23025,XPA
7508,Q01831,XPC
7514,O14980,XPO1
7531,P62258,YWHAE
7555,P62633,CNBP
7704,Q05516,ZBTB16
7750,Q9UBW7,ZMYM2
7799,Q13029,PRDM2
7849,Q06710,PAX8
7852,P61073,CXCR4
7913,P35659,DEK
7942,P19484,TFEB
7994,Q92794,KAT6A
8013,Q92570,NR4A3
8019,Q15059,BRD3
8021,P35658,NUP214
8028,P55197,MLLT10
8030,Q16204,CCDC6
8031,Q13772,NCOA4
8085,O14686,KMT2D
8091,P52926,HMGA2
8115,P56279,TCL1A
8148,Q92804,TAF15
8178,P55199,ELL
8216,Q8N653,LZTR1
8218,P53675,CLTCL1
8233,Q15696,ZRSR2
8241,P98175,RBM10
8242,P41229,KDM5C
8243,Q14683,SMC1A
8289,O14497,ARID1A
8294,P62805,HIST1H4I
8295,Q9Y4A5,TRRAP
8301,Q13492,PICALM
8312,O15169,AXIN1
8313,Q9Y2T1,AXIN2
8314,Q92560,BAP1
8358,P68431,HIST1H3B
8405,O43791,SPOP
8452,Q13618,CUL3
8471,O14654,IRS4
8493,O15297,PPM1D
8496,Q86W92,PPFIBP1
8522,O60861,GAS7
8626,Q9H3D4,TP63
8648,Q15788,NCOA1
8651,O15524,SOCS1
8726,O75530,EED
8764,Q92956,TNFRSF14
8805,O15164,TRIM24
8833,P49915,GMPS
8880,Q96AE4,FUBP1
8915,O95999,BCL10
8929,Q99453,PHOX2B
9098,P35125,USP6
9101,P40818,USP8
9113,O95835,LATS1
9135,Q15276,RABEP1
9175,O43283,MAP3K13
9203,Q14202,ZMYM3
9314,O43474,KLF4
9321,Q15643,TRIP11
9401,O94761,RECQL4
9444,Q96PU8,QKI
9582,Q9UH17,APOBEC3B
9611,O75376,NCOR1
9612,Q9Y618,NCOR2
9639,O15013,ARHGEF10
9659,Q5VU43,PDE4DIP
9709,Q15011,HERPUD1
9715,Q86XD5,FAM131B
9774,Q9NYF8,BCLAF1
9817,Q14145,KEAP1
9869,Q15047,SETDB1
9901,O43295,SRGAP3
9935,Q9Y5Q3,MAFB
9950,Q8TBA6,GOLGA5
9967,Q9Y2W1,THRAP3
9968,Q93074,MED12
10000,Q9Y243,AKT3
10006,Q8IZP0,ABI1
10019,Q9UQQ2,SH2B3
10142,Q99996,AKAP9
10186,Q9Y693,LHFPL6
10215,Q13516,OLIG2
10243,Q9NQX3,GPHN
10272,O95633,FSTL3
10274,Q8WVM7,STAG1
10320,Q13422,IKZF1
10342,Q92734,TFG
10397,Q92597,NDRG1
10499,Q15596,NCOA2
10568,O95436,SLC34A2
10644,Q9Y6M1,IGF2BP2
10664,P49711,CTCF
10721,O75417,POLQ
10735,Q8N3U4,STAG2
10736,Q9NPC8,SIX2
10801,Q9UHD8,SEPTIN9
10892,Q9UDY8,MALT1
10962,Q13015,MLLT11
10978,Q92989,CLP1
11064,Q7Z7A1,CNTRL
11116,O95684,FGFR1OP
11122,O14522,PTPRT
11143,O95251,KAT7
11166,Q9Y651,SOX21
11168,O75475,PSIP1
11177,Q9NRL2,BAZ1A
11197,Q9Y5W5,WIF1
11200,O96017,CHEK2
11328,O95302,FKBP9
22849,Q8NE35,CPEB3
22947,P0CJ87,
22978,P49902,NT5C2
23013,Q96T58,SPEN
23048,Q96RU3,FNBP1
23067,Q9UPS6,SETD1B
23085,Q8IUD2,ERC1
23092,Q9UNA1,ARHGAP26
23152,Q96RK0,CIC
23157,Q14141,SEPTIN6
23185,Q92615,LARP4B
23261,Q9Y6Y1,CAMTA1
23305,Q9UKU0,ACSL6
23365,Q9NZN5,ARHGEF12
23373,Q6UUV9,CRTC1
23405,Q9UPY3,DICER1
23451,O75533,SF3B1
23462,Q9Y5J3,HEY1
23476,O60885,BRD4
23484,O95214,LEPROTL1
23512,Q15022,SUZ12
23522,Q8WYB5,KAT6B
23598,Q9HBE1,PATZ1
23624,Q9ULV8,CBLC
25766,Q6NWY9,PRPF40B
25913,Q9NUX5,POT1
25925,Q96K83,ZNF521
25937,Q9GZV5,WWTR1
26039,O75177,SS18L1
26040,Q9Y6X0,SETBP1
26047,Q9UHC6,CNTNAP2
26065,Q8ND56,LSM14A
26511,Q9UKJ5,CHIC2
26524,Q9NRM7,LATS2
26960,Q8NFP9,NBEA
26986,P11940,PABPC1
27044,Q7KZF4,SND1
27086,Q9H334,FOXP1
27125,Q9UHB7,AFF4
27436,Q9HC35,EML4
29072,Q9BYW2,SETD2
29102,Q9NRR4,DROSHA
29126,Q9NZQ7,CD274
29844,P0C1Z6,TFPT
29974,Q9NQ94,A1CF
30012,O43711,TLX3
30835,Q9NNX6,CD209
50515,Q9NPF2,CHST11
50615,Q9HBE5,IL21R
51059,Q49AJ0,FAM135B
51119,Q9Y3A5,SBDS
51176,Q9UJU2,LEF1
51199,Q8N4C6,NIN
51340,Q9BZJ0,CRNKL1
51366,O95071,UBR5
51517,Q9NZQ3,NCKIPSD
51592,Q9UPN9,TRIM33
51684,Q9UMX1,SUFU
51755,Q9NYV4,CDK12
53335,Q9H165,BCL11A
53353,Q9NZR2,LRP1B
54487,Q8WYQ5,DGCR8
54738,Q99581,FEV
54790,Q6N021,TET2
54855,Q5VWP2,TENT5C
54880,Q6W2J9,BCOR
54894,Q68DV7,RNF43
54904,Q9BZ95,NSD3
54949,Q9NX18,SDHAF2
55159,Q6PCD5,RFWD3
55160,Q9HCE6,ARHGEF10L
55193,Q86U86,PBRM1
55252,Q76L83,ASXL2
55294,Q969H0,FBXW7
55422,Q9NQX6,ZNF331
55500,Q9HBU6,ETNK1
55596,Q6NZY4,ZCCHC8
55654,O75204,TMEM127
55728,Q86UW6,N4BP2
57007,P25106,ACKR3
57082,Q8NG31,KNL1
57105,Q9NS75,CYSLTR2
57120,Q9HD26,GOPC
57167,Q9UJQ4,SALL4
57448,Q9NR09,BIRC6
57492,Q8NFD5,ARID1B
57591,Q969V6,MRTFA
57670,Q9HCM3,KIAA1549
57674,Q63HN8,RNF213
57698,A0MZ66,SHTN1
57820,Q9NPC3,CCNB1IP1
58508,Q8NEZ4,KMT2C
63035,Q5H9F3,BCORL1
63976,Q9HAZ2,PRDM16
64109,Q9HC73,CRLF2
64324,Q96L73,NSD1
64764,Q70SY1,CREB3L2
64783,Q96T37,RBM15
64784,Q6UUV7,CRTC3
64919,Q9C0K0,BCL11B
65268,Q9Y3S1,WNK2
79058,Q9BZE9,ASPSCR1
79145,Q9BUK0,CHCHD7
79577,Q6P1J9,CDC73
79633,Q6V0I7,FAT4
79718,Q9BZK7,TBL1XR1
79728,Q86YC2,PALB2
80204,Q86XK2,FBXO11
80243,Q70Z35,PREX2
80304,Q9H6R7,WDCP
80312,Q8NFU7,TET1
80380,Q9BQ51,PDCD1LG2
81608,Q6UN15,FIP1L1
83417,Q96PJ5,FCRL4
83596,Q9HB09,BCL2L12
83990,Q9BX63,BRIP1
84101,Q9H0E7,USP44
84133,Q9ULT6,ZNRF3
84231,Q6Q0C0,TRAF7
84295,Q8IWS0,PHF6
84376,Q86VS8,HOOK3
84433,Q9BXL7,CARD11
84441,Q8IZL2,MAML2
84870,Q9BXY4,RSPO3
84902,Q96ST8,CEP89
85414,Q96JT2,SLC45A3
90417,Q9Y448,KNSTRN
90827,Q96JC4,ZNF479
90993,Q96BA8,CREB3L1
91464,Q2M1V0,ISX
92017,Q8TEQ0,SNX29
92521,Q5M775,SPECC1
94025,Q8WXI7,MUC16
114788,Q7Z407,CSMD3
114825,Q96N64,PWWP2A
116028,Q96E14,RMI2
120114,Q8TDW7,FAT3
121227,Q6UXM1,LRIG3
124540,Q96DH6,MSI2
124583,Q8WVQ1,CANT1
139285,Q5JTC6,AMER1
140885,P78324,SIRPA
143187,Q96AJ9,VTI1A
145788,H3BRN8,C15orf65
151963,Q8IYB1,MB21D2
168975,Q8NA66,CNBD1
171017,Q8TF68,ZNF384
171023,Q8IXJ9,ASXL1
196528,Q68CP9,ARID2
201163,Q8NFG4,FLCN
221895,Q86VZ6,JAZF1
256646,Q86Y26,NUTM1
259283,Q8NDY4,MDS2
283149,Q86UU0,BCL9L
283150,Q6PIV2,FOXR1
286530,Q86VZ1,P2RY8
340419,Q6UXX9,RSPO2
340578,Q5VW00,DCAF12L2
345930,Q008S8,ECT2L
346389,Q6ZN28,MACC1
353088,Q86V71,ZNF429
442444,Q5HY64,FAM47C
653489,A6NKT7,RGPD3
728130,Q5VT03,NUTM2A
729262,A6NNL0,NUTM2B
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