Dear FSL experts,
I am having a neuroimage analysis problem for which I would highly appreciate your advice.
I manually created binary masks on a T1w image for several subjects (in native space). I would like to to transform all these individual masks to the average space of all subjects together. I already created the average space but I am not sure how I can transform the binary mask to this average space and, importantly, that the transformed masks are not only transformed to standard space but are also depicted in the right location within standard space. I assume I need first some kind of transformation and then some kind of registration?
The goal is to sum all these transformed masks together using fslmaths to create some kind of heat plot.
I am very thankful for any help!
Best regards,
Ben
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