Dear FSL experts,
I've been trying to run vbm_2_template -n on my data and got the following errors, any suggestions?
[Tamir@localhost vbm]$ fslvbm_2_template -n
sub01_MP2RAGE_denoised_struc
sub02_MP2RAGE_denoised_struc
sub03_MP2RAGE_denoised_struc
sub04_MP2RAGE_denoised_struc
sub05_MP2RAGE_denoised_struc
sub06_MP2RAGE_denoised_struc
sub07_MP2RAGE_denoised_struc
sub08_MP2RAGE_denoised_struc
sub09_MP2RAGE_denoised_struc
sub10_MP2RAGE_denoised_struc
sub11_MP2RAGE_denoised_struc
sub12_MP2RAGE_denoised_struc
sub13_MP2RAGE_denoised_struc
sub15_MP2RAGE_denoised_struc
sub16_MP2RAGE_denoised_struc
sub17_MP2RAGE_denoised_struc
sub18_MP2RAGE_denoised_struc
sub19_MP2RAGE_denoised_struc
sub20_MP2RAGE_denoised_struc
sub21_MP2RAGE_denoised_struc
sub22_MP2RAGE_denoised_struc
sub23_MP2RAGE_denoised_struc
sub24_MP2RAGE_denoised_struc
sub26_MP2RAGE_denoised_struc
sub27_MP2RAGE_denoised_struc
sub28_MP2RAGE_denoised_struc
sub29_MP2RAGE_denoised_struc
sub30_MP2RAGE_denoised_struc
sub31_MP2RAGE_denoised_struc
sub32_MP2RAGE_denoised_struc
sub33_MP2RAGE_denoised_struc
sub35_MP2RAGE_denoised_struc
sub36_MP2RAGE_denoised_struc
sub37_MP2RAGE_denoised_struc
sub38_MP2RAGE_denoised_struc
sub39_MP2RAGE_denoised_struc
sub40_MP2RAGE_denoised_struc
sub41_MP2RAGE_denoised_struc
sub42_MP2RAGE_denoised_struc
sub44_MP2RAGE_denoised_struc
sub46_MP2RAGE_denoised_struc
sub47_MP2RAGE_denoised_struc
sub49_MP2RAGE_denoised_struc
Running segmentation: ID=9189
Running initial registration: ID=13052
Image Exception : #63 :: No image files match: sub01_MP2RAGE_denoised_struc_GM_to_T
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: sub01_MP2RAGE_denoised_struc_GM_to_T
./fslvbm2c: line 13: 17815 Aborted (core dumped) $FSLDIR/bin/fslmerge -t template_4D_GM $mergelist
Image Exception : #63 :: No image files match: template_4D_GM
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: template_4D_GM
./fslvbm2c: line 14: 17818 Aborted (core dumped) $FSLDIR/bin/fslmaths template_4D_GM -Tmean template_GM
Image Exception : #63 :: No image files match: template_GM
No image files match: template_GM
/usr/local/fsl/bin/fslswapdim: line 107: [: =: unary operator expected
Image Exception : #63 :: No image files match: template_GM
No image files match: template_GM
/usr/local/fsl/bin/fslswapdim: line 115: [: -gt: unary operator expected
Image Exception : #63 :: No image files match: template_GM
No image files match: template_GM
/usr/local/fsl/bin/fslswapdim: line 117: [: -gt: unary operator expected
Image Exception : #63 :: No image files match: template_GM
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: template_GM
/usr/local/fsl/bin/fslswapdim: line 184: 17853 Aborted (core dumped) $comm
Image Exception : #63 :: No image files match: template_GM
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: template_GM
./fslvbm2c: line 16: 17861 Aborted (core dumped) $FSLDIR/bin/fslmaths template_GM -add template_GM_flipped -div 2 template_GM_init
Creating first-pass template: ID=
Running registration to first-pass template: ID=The command you have requested cannot be found or is not executable
/usr/local/fsl/bin/fsl_sub: line 514: you: command not found
Creating second-pass template: ID=
Study-specific template will be created, when complete, check results with:
fslview struc/template_4D_GM
and turn on the movie loop to check all subjects, then run:
fslview /usr/local/fsl/data/standard/tissuepriors/avg152T1_gray struc/template_GM
to check general alignment of mean GM template vs. original standard space template.
Thanks!
Tamir
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|