Hello,
Here is another update on my progress. Please please help. I can't figure out why my images are not aligning.
I noticed that my T1 images where in RAS orientation when I opened up the headers. So, I changed the image data orientation to -X, Y+, Z +
The FOV for the image 208 x 300 x 320
Voxel size is 0.8 x .8 x .8
When I changed the orientation, the image registration still failed!
For some reason, the fslreorient2std part of the scrip didn't change any orientations, I had to do this manually in mango.
Please help, I can't figure out why the images are not registering.
ALso, I normalize the structural images to MNI 2 mm voxels
Does any of this explain the failing registration?
Thanks,
J
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