Hi,
Yes I used FAST segmentation to extract the WM volume whole brain.
I guess I need to create a binarized mask of the uncinate left and right and then somehow just extract the WM volume from the mask area.
I have tried few different ways but am having issues.
Because I will need to extract the mask volume for each participant individually I think I need to get each participants T1 image into MNI space first.
I have been right through the TBSS process with these participants. Am I correct in saying that the MNI registration only occurs to the whole participant group together? or is there an individual MNI registered image produced for each participant somewhere in the output?
Kind regards,
Dan
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