Dear FSL experts,
I used the fsl_deface command on T1w and T2w images in fsl-6.0.2. Both T1w and T2w images were rotated using fslreorient2std. After deface the T1w images look well, but T2w images were not good. The top of the head have been removed in T2w. Do you know how to used deface command on T2w images?
example
fslreorient2std $input $input_reorient
fsl_deface $input_reorient $output
Best regards,
Guoyuan
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