Dear bianca experts,
I using bianca, however I have the following error when running bianca command:
Traceback (most recent call last):
File "/usr/local/fsl/bin/bianca", line 1033, in <module>
p_main()
File "/usr/local/fsl/bin/bianca", line 1007, in p_main
labels = labelvals[idvals]
IndexError: index 467606 is out of bounds for axis 1 with size 0
This is the command-line that I use:
bianca --singlefile=masterfile.txt --trainingnums=1,2,3,4,5,6,7,8,9,10 --labelfeaturenum=4 --querysubjectnum=1 --brainmaskfeaturenum=1 --featuresubset=1,2 --matfeaturenum=3 --trainingpts=2000 --nonlespts=10000 --selectpts=noborder -o bianca-output/bianca_output --saveclassifierdata=mytraining -v
and my masterfile.txt looks like this (I have used 10 subjects for training and 1 subject for query):
CSRI-101-1-VK-Structural.anat/FLAIR_brain.nii CSRI-101-1-VK-Structural.anat/T1_brain_to-FLAIR_brain.nii CSRI-101-1-VK-Structural.anat/T1_brain_to-FLAIR_brain_xfm.mat CSRI-101-1-VK-Structural.anat/T1_brain_to-FLAIR_brain_xfm.mat CSRI-101-1-VK-Structural.anat/FLAIR_lesionmask.nii
And also when I ran command "fsl_anat --nosubcortseg -i T1" and the resulting 'lesionmask.img' file seems to be empty in T1.anat folder.
Because of this I am getting above error? I do not know where I am going wrong.
Any help would means a lot.
With regards
Korann
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