Hi,
What happens if you do NOT import the STAR file but
run "relion_convert_star --i goodparticles.star --o converted.star"?
Please cite the header of converted.star. Please don't use screen shots.
Best regards,
Takanori Nakane
On 2019/12/20 22:30, Christopher Arthur wrote:
> Hi Takanori,
> Here is a snapshot of the file goodparticles.star (just the first two
> particles)
> goodparticles_star_file.JPG
> Let me know what you think
> Thanks!
> -Chris
>
>
> On Fri, Dec 20, 2019 at 1:20 PM Takanori Nakane
> <[log in to unmask] <mailto:[log in to unmask]>> wrote:
>
> Hi,
>
> How does rlnImageName column looks like in the goodparticles.star?
>
> Takanori
>
> On 2019/12/20 21:18, Christopher Arthur wrote:
> > Hi all,
> > I have been working through importing particles from Warp to
> process in
> > Relion3.1
> > Here is the sequence of events:
> > > run Warp on the dataset, this produces the
> "goodparticles.star" file
> > > setup Relion directory in my home processing folder (different
> > machine from where I am running Warp
> > > SFTP the "goodparticles.star" file into the Relion project
> directory
> > > create a Symlink in the Relion project directory pointing to the
> > "particles" folder in the Warp processing directory
> > > start a Relion job in my Relion directory
> > > "Import" the "goodparticles.star" file in Relion (I select the
> node
> > type "Particles STAR file (.star)
> > > start a 2D classification job using the "goodarticles.star"
> file from
> > the import
> >
> > I then get this error:
> > ObservationModel::getBoxSize: box sizes not available. Make sure
> > particle images are available before converting/importing STAR files
> > from earlier versions of RELION.
> >
> > Any advice is greatly appreciated!
> >
> > Thanks!
> > -Chris
> >
> >
> >
> >
> >
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