Dear Matthew,
Thanks a lot for that! It makes sense now.
Oscar
Just wonder if anyone can help me with the two other questions?
2. Besides running randomise on the skeleton, is it possible to run it on the "all_FA.nii.gz" or "all_MD"nii.gz" files? This is because I am also curious to know the correlation with some of the deep gray matter structures which is affected in Parkinson's disease.
3. Are there any good ways to the ROI analysis on the deep gray matters (e.g. caudate nucleus, thalamus) to extract the MD/FA values out of it, using standardised altas?
Thanks a lot for the help in advance.
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