Hi John,
Thank you for your quick reply.
I have used the deformation utility but after using the M2*inv(M2)*M1 to transform from Template Space to native structural space using the u_*.nii flow field. I have always known (wrongly?) that the conversion had to be done from MNI to Template space first and then, only then, using the deformation utility with the flow field to convert images to native structural space. So Basically I can jump the step in between, is that right?
Thank you very much
that is helpful
best wishes
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