Dear Carolyn,
this is somewhat weird, because the crash happens at the very first step of denoising. Have you something changed from the default settings, esp. the setting for denoising or is there anything else different?
Best,
Christian
On Wed, 20 Nov 2019 16:15:08 +0000, Carolyn Wu <[log in to unmask]> wrote:
>Dear CAT12 experts,
>
>We are getting a segmentation failure error, which I thought might be due to the brand new T1 sequence we were piloting for a new Philips scanner needing tweaking / failed full conversion of dicom files.
>
>However, I have tried these things so far, all resulting in the same error:
>-tried segmenting one of the T1 images out of an old dataset that was segmented successfully earlier this year on the same computer
>-used an example T1 out of the IXI20 dataset, which also segmented successfully before
>-updated to CAT12 version from r1318 to r1450 and tried the above again
>-reoriented the new T1 so that the origin is now roughly AC
>
>
>Example error message below, full err folder in attachment. We have Matlab r2018a.
>Also attached is the err folder from the try on the IXI T1.
>
>------------------------------------------------------------------------
>CAT12.6 r1450: 1/1: .\DICOM_T1W_3D_TFE_cs_20191119180810_201.nii
>------------------------------------------------------------------------
>SANLM denoising (medium):
>------------------------------------------------------------------------
>CAT Preprocessing error for DICOM_T1W_3D_TFE_cs_20191119180810_201:
>------------------------------------------------------------------------
>Index exceeds array bounds.
>------------------------------------------------------------------------
> 22 - spm_write_vol
> 500 - cat_vol_sanlm_filter
> 221 - cat_vol_sanlm_file
> 136 - cat_vol_sanlm
> 195 - cat_run_job
> 15 - cat_run_newcatch
> 720 - run_job
> 434 - cat_run
> 29 - cfg_run_cm
> 1717 - local_runcj
> 972 - cfg_util
> 710 - MenuFileRun_Callback
> 95 - gui_mainfcn
> 53 - cfg_ui
>------------------------------------------------------------------------
>
>I have a feeling I am missing something very basic, but am at a loss as to what to change.
>Any recommendations would be appreciated!
>
>Thank you in advance.
>
>Best regards,
>Carolyn
>
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