Could you send the content of the directory ./stats, you get a listing of all files with the ls command executed in that directory.
Christina
________________________________________
Von: FSL - FMRIB's Software Library <[log in to unmask]> im Auftrag von Daphine Grassi <[log in to unmask]>
Gesendet: Montag, 18. November 2019 04:18
An: [log in to unmask]
Betreff: [FSL] fslmaths error
Hi!
Dear experts,
I've tried the fslsplit on all_FA_skeletonized and renamed all the volumes generated.
However, when I try to run fslmaths, I get the following error.
I opened the volumes on MRIcron and they looked fine.
Can you please help me?
Thanks in advance!
Daphine
iMac:stats daphine$ fslsplit all_FA_skeletonised
iMac:stats daphine$ fslmaths t3_P01_dti_FA_FA -sub t1_P01_dti_FA_FA P01_diff
fslmaths t3_P02_dti_FA_FA -sub t1_P02_dti_FA_FA P02_diff
fslmaths t3_P03_dti_FA_FA -sub t1_P03_dti_FA_FA P03_diff
fslmaths t3_P04_dti_FA_FA -sub t1_P04_dti_FA_FA P04_diff
fslmaths t3_P05_dti_FA_FA -sub t1_P05_dti_FA_FA P05_diff
fslmaths t3_P06_dti_FA_FA -sub t1_P06_dti_FA_FA P06_diff
fslmaths t3_P07_dti_FA_FA -sub t1_P07_dti_FA_FA P07_diff
fslmaths t3_P08_dti_FA_FA -sub t1_P08_dti_FA_FA P08_diff
fslmaths t3_P09_dti_FA_FA -sub t1_P09_dti_FA_FA P09_diff
fslmaths t3_P10_dti_FA_FA -sub t1_P10_dti_FA_FA P10_diff
fslmaths t3_P11_dti_FA_FA -sub t1_P11_dti_FA_FA P11_diff
fslmaths t3_P12_dti_FA_FA -sub t1_P12_dti_FA_FA P12_diff
fslmaths t3_P13_dti_FA_FA -sub t1_P13_dti_FA_FA P13_diff
fslmaths t3_P14_dti_FA_FA -sub t1_P14_dti_FA_FA P14_diff
fslmaths t3_P15_dti_FA_FA -sub t1_P15_dti_FA_FA P15_diff
fslmaths t3_P16_dti_FA_FA -sub t1_P16_dti_FA_FA P16_diff
fslmaths t3_P17_dti_FA_FA -sub t1_P17_dti_FA_FA P17_diff
fslmaths t3_P18_dti_FA_FA -sub t1_P18_dti_FA_FA P18_diff
fslmaths t3_P19_dti_FA_FA -sub t1_P19_Cannot open volume t3_P01_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P02_dti_FA_FA -sub t1_P02_dti_FA_FA P02_diff
Cannot open volume t3_P02_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P03_dti_FA_FA -sub t1_P03_dti_FA_FA P03_diff
Cannot open volume t3_P03_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P04_dti_FA_FA -sub t1_P04_dti_FA_FA P04_diff
Cannot open volume t3_P04_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P05_dti_FA_FA -sub t1_P05_dti_FA_FA P05_diff
Cannot open volume t3_P05_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P06_dti_FA_FA -sub t1_P06_dti_FA_FA P06_diff
Cannot open volume t3_P06_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P07_dti_FA_FA -sub t1_P07_dti_FA_FA P07_diff
Cannot open volume t3_P07_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P08_dti_FA_FA -sub t1_P08_dti_FA_FA P08_diff
Cannot open volume t3_P08_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P09_dti_FA_FA -sub t1_P09_dti_FA_FA P09_diff
Cannot open volume t3_P09_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P10_dti_FA_FA -sub t1_P10_dti_FA_FA P10_diff
Cannot open volume t3_P10_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P11_dti_FA_FA -sub t1_P11_dti_FA_FA P11_diff
Cannot open volume t3_P11_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P12_dti_FA_FA -sub t1_P12_dti_FA_FA P12_diff
Cannot open volume t3_P12_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P13_dti_FA_FA -sub t1_P13_dti_FA_FA P13_diff
Cannot open volume t3_P13_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P14_dti_FA_FA -sub t1_P14_dti_FA_FA P14_diff
Cannot open volume t3_P14_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P15_dti_FA_FA -sub t1_P15_dti_FA_FA P15_diff
Cannot open volume t3_P15_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P16_dti_FA_FA -sub t1_P16_dti_FA_FA P16_diff
Cannot open volume t3_P16_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P17_dti_FA_FA -sub t1_P17_dti_FA_FA P17_diff
Cannot open volume t3_P17_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P18_dti_FA_FA -sub t1_P18_dti_FA_FA P18_diff
Cannot open volume t3_P18_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P19_dti_FA_FA -sub t1_P19_dti_FA_FA P19_diff
fslmaths t3_P20_dti_FA_FA -sub t1_P20_dti_FA_FA P20_diffCannot open volume t3_P19_dti_FA_FA for reading!
iMac:stats daphine$ fslmaths t3_P20_dti_FA_FA -sub t1_P20_dti_FA_FA P20_diff
Cannot open volume t3_P20_dti_FA_FA for reading!
iMac:stats daphine$
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