Great.
I see a lot of CIL issues on
https://github.com/CCPPETMR/SIRF/milestone/6
I guess these should all be closed?
I've updated the UserGuide and merged that. I think we're good to tag!
Edo, can you start with this or do you need help?
> -----Original Message-----
> From: CCP-PETMR Developers list <[log in to unmask]>
> On Behalf Of Edoardo Pasca - UKRI STFC
> Sent: 23 October 2019 16:27
> To: [log in to unmask]
> Subject: Re: today's the day
>
> Evgueni and I have merged the add_to_sirf_classes to master. This is the
> branch that fixes compatibility with CIL.
>
>
> Edo
>
> ________________________________
> From: CCP-PETMR Developers list <[log in to unmask]> on
> behalf of Brown, Richard <[log in to unmask]>
> Sent: Wednesday, October 23, 2019 3:49:02 PM
> To: [log in to unmask]
> Subject: Re: today's the day
>
> I've also:
>
> * Changed all old imports (pSTIR/pGadgetron/pReg) to the current scheme
> * Put Johannes' notebooks at the base level of MR notebooks. The
> predecessor notebooks are in MR/Old_notebooks.
>
> Best,
> Richard
>
> On 23 Oct 2019, at 15:31, Brown, Richard
> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Hi all,
>
> I've just pushed the introductory notebook to SIRF-Exercises:
> notebooks/Introductory/introduction.ipynb<https://github.com/CCPPETMR
> /SIRF-Exercises/blob/master/notebooks/Introductory/introduction.ipynb>.
>
> This is the notebook that we will ask participants to complete prior to the
> start of the course.
>
> The notebook just shows participants how to import python packages, load
> ImageData, perform some simple maths, and then display the image. (It's
> the first half of the PET display_and_projection notebook.)
>
> Best,
> Richard
>
> Research Associate in Medical Imaging Physics at University College London,
> Institute of Nuclear Medicine, UCL Hospital, Tower 5,
> 235 Euston Road, London NW1 2BU, UK
>
> On 23 Oct 2019, at 11:22, Edoardo Pasca - UKRI STFC
> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Obviously this VM has been created before Kris tagged STIR!
>
> Bear with me...
>
> Edo
>
> From: CCP-PETMR Developers list <CCP-PETMR-
> [log in to unmask]<mailto:[log in to unmask]>> On
> Behalf Of Edoardo Pasca - UKRI STFC
> Sent: 23 October 2019 10:42
> To: [log in to unmask]<mailto:CCP-PETMR-
> [log in to unmask]>
> Subject: Re: today's the day
>
> Hi there,
>
> Yesterday afternoon I've cooked up a new VM with Virtualbox 6.0.14.
>
> This uses SuperBuild master and NOT latest SIRF, but my add_to_sirf_classes
> branch.
>
> Have a go.
>
> https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fedosil.
> net%2Fstfc%2Fsirf%2FSIRF_CIL_Symposium_rc1.ova&data=02%7C01%7
> C%7Cf783455585794761da9d08d757cd81d3%7C1faf88fea9984c5b93c9210a11d
> 9a5c2%7C0%7C0%7C637074412514594367&sdata=ou6a9UOfy9qznL1hfV
> AU5lTSFhl3OHfY99IIgxLT2hY%3D&reserved=0<https://eur01.safelinks.p
> rotection.outlook.com/?url=http%3A%2F%2Fedosil.net%2Fstfc%2Fsirf%2FSI
> RF_CIL_Symposium_rc1.ova&data=02%7C01%7C%7Cf783455585794761
> da9d08d757cd81d3%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C63
> 7074412514594367&sdata=ou6a9UOfy9qznL1hfVAU5lTSFhl3OHfY99IIgxL
> T2hY%3D&reserved=0>
>
> I'll prepare new ones once I've merged a few things... ;)
>
> Edo
>
> From: CCP-PETMR Developers list <CCP-PETMR-
> [log in to unmask]<mailto:[log in to unmask]>> On
> Behalf Of Thielemans, Kris
> Sent: 23 October 2019 07:53
> To: [log in to unmask]<mailto:CCP-PETMR-
> [log in to unmask]>
> Subject: today's the day
>
> Hi all
>
> Nearly there. I've updated version_config to use STIR 4.0.0-alpha and set the
> current SIRF master tag as DEFAULT. All green (after some restarting). Edo
> will merge the CIL stuff in today and promises to give us a machine:)
>
> Richard, I haven't been able to check your progress yet on the SIRF-
> exercises. Feel free to merge your updates now (such that they get included)
> or wait a bit.
>
> Evgueni, can you create the SIRF 2.1.0-rc.1 checklist issue? (I've updated it).
> Can you also help Richard with the exercises (e.g. by testing).
>
> Let's give the list occasional updates on progress.
>
> Thanks!
>
> Kris
>
>
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