Sorry for replying to my own post 2 times but here is the output of:
[robka@dhcp-10-208-21-42 struc]$ cat fslvbm2b.e107327.1
/home/robka/fsl/bin/fsl_reg: line 125: 107597 Segmentation fault (core dumped) ${FSLDIR}/bin/flirt -ref $REFERENCE -in $INPUT $INMASK -omat ${I2R}.mat $flirtopts
/home/robka/fsl/bin/fsl_reg: line 145: 107599 Segmentation fault (core dumped) ${FSLDIR}/bin/flirt -ref $REFERENCE -in $INPUT -applyxfm -init ${I2R}.mat -out $I2R $flirto
Same for all 9.
And:
[robka@dhcp-10-208-21-42 struc]$ cat fslvbm2c.e108220
Image Exception : #63 :: No image files match: 0001_struc_GM_to_T
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: 0001_struc_GM_to_T
./fslvbm2c: line 13: 108443 Aborted (core dumped) $FSLDIR/bin/fslmerge -t template_4D_GM $mergelist
Image Exception : #63 :: No image files match: template_4D_GM
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: template_4D_GM
./fslvbm2c: line 14: 108453 Aborted (core dumped) $FSLDIR/bin/fslmaths template_4D_GM -Tmean template_GM
Image Exception : #63 :: No image files match: template_GM
No image files match: template_GM
/home/robka/fsl/bin/fslswapdim: line 107: [: =: unary operator expected
Image Exception : #63 :: No image files match: template_GM
No image files match: template_GM
/home/robka/fsl/bin/fslswapdim: line 115: [: -gt: unary operator expected
Image Exception : #63 :: No image files match: template_GM
No image files match: template_GM
/home/robka/fsl/bin/fslswapdim: line 117: [: -gt: unary operator expected
Image Exception : #63 :: No image files match: template_GM
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: template_GM
/home/robka/fsl/bin/fslswapdim: line 184: 108500 Aborted (core dumped) $comm
Image Exception : #63 :: No image files match: template_GM
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: template_GM
./fslvbm2c: line 16: 108505 Aborted (core dumped) $FSLDIR/bin/fslmaths template_GM -add template_GM_flipped -div 2 template_GM_init
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