Hello!
Unfortunately, I am not an FSL user and so despite reading through PALM and FSL GLM Guide I don't know where I am going wrong. I want to condunct PALM analysis, correcting for multiple contrasts (the aim is also to control for several modalities but for now I'm just trying to make the toolbox work). I use the following command:
palm -i input.csv -d design.csv -t contrasts.csv -f ftests.csv -fonly -corrcon -n 100
and I get the following error message:
Reading input 1/1: input.csv
Reading design matrix and contrasts.
Index exceeds matrix dimensions.
Error in palm_takeargs (line 2308)
rC1 = plm.rC{1}(1);
Error in palm_core (line 33)
[opts,plm] = palm_takeargs(varargin{:});
Error in palm (line 81)
palm_core(varargin{:});
I am really confused because my csv files seem to have the right dimensions (input: 120x163842; design: 120x8; contrasts: 3x8; ftests: 3x3). They are csv files separated with spaces.
Can anybody give me any clue on what is wrong with my command or with design, contrasts, etc. files? I would be very grateful!
Best regards,
Gabriela Dzięgiel-Fivet
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