Hi,
> In my modified file, the metadata
> information is copied from the Relion 3.1 file.
Do you mean it has "data_particles" not "data_"?
> re-import the modified file
What happens if you use the modified STAR file WITHOUT
importing?
Did import change something?
> I visually checked both files, and they look the same.
Please compare them by "diff" command.
Best regards,
Takanori Nakane
> Short description of what I have done:
>
> I run 2D classification in Relion 3.1 and selected good classes which
> resulted in particle.star file with all information in Relion 3.1 format.
> This file I used outside Relion, removed some particles and tried to
> re-import the modified file, but it failed (previous error). Just for the
> sanity check, I copied the metadata from the raw particle.star to the
> modified one, but still, the same problem occurs. I visually checked both
> files, and they look the same. Import of the raw file works perfectly
> fine. Is there any other difference between star file from 3.1 and 3.0?
>
>
>
> Best,
>
> Dawid
>
>
> Dawid Zyla, PhD
> ETH Zurich
> Institute of Molecular Biology and Biophysics
> Otto-Stern-Weg 5, HPK E2
> CH?093 Zurich
> Phone: +41 (0)44 6333292
> ________________________________
> From: Takanori Nakane <[log in to unmask]>
> Sent: 22 October 2019 16:56:44
> To: Zyla Dawid
> Cc: [log in to unmask]
> Subject: Re: [ccpem] Relion 3.1 star file check
>
> Hi,
>
> Most likely cause is that you already have an optics group
> table ("data_optics") but the particle datablock does not have
> a name; it must be "data_particles" not "data_".
>
> Best regards,
>
> Takanori Nakane
>
>> Hi All,
>> I have a question about the star handler in Relion
>> 3.1-beta-commit-a6aaa5.
>> I have got an error during import or running of
>> refinement/classification
>> jobs with a particle star file:
>>
>> ERROR:
>> StarConverter::convert_3p0_particlesTo_3p1: Star file is already at
>> version 3.0001
>>
>> This error happens to all my star files which were modified outside
>> Relion
>> 3.1. I used a home-made script which keeps particles only from selected
>> micrographs with all metadata rows. Previously in Relion 3.0, everything
>> was working perfectly fine.
>>
>> What is the star file check for Relion 3.1? I am wondering if the is any
>> part of the star file which is recognized by jobs and tries to convert
>> it
>> to the new format of star files. Is it possible to switch this option
>> off?
>> I would be very grateful for some hints!
>>
>> Best,
>> Dawid
>>
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>
>
>
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