Hi,
Probably your PATH is wrong and you are running RELION 2.x.
Note that running the GUI as "/path/to/relion-3.0/bin/relion"
without setting PATH is not a right way. The GUI might be 3.0, but
the actual program (relion_postprocess) is executed from PATH,
which can be an older version.
Best regards,
Takanori Nakane
> Hey everybody,
>
> I am getting the following output after starting a post-processing job
> in RELION-3.0.7:
>
> == Reading input half-reconstructions:
> ? + half1-map:
> Refine3D/job169/run_half1_class001_unfil.mrc_half1_class001_unfil.mrc
> ? + half2-map:
> Refine3D/job169/run_half1_class001_unfil.mrc_half2_class001_unfil.mrc
> Cannot read file
> Refine3D/job169/run_half1_class001_unfil.mrc_half1_class001_unfil.mrc It
> does not exist
> File: ./src/image.h line: 1040
>
> It seems like the input file is altered by inserting a
> "half1_class001_unfil.mrc" which doesn't make sense to me. I tried to
> rename the input file accordingly but this hinders the job from starting.
> My used command is:
>
> which relion_postprocess` --mask MaskCreate/job171/mask.mrc --i
> Refine3D/job169/run_half1_class001_unfil.mrc --o
> PostProcess/job211/postprocess? --angpix 1.35 --mtf
> K2summit_MTF-curves.star --auto_bfac? --autob_lowres 10
>
> Does anyone of you know how to deal with this.
> Thank you for help
>
> Cheers,
> Maximilian Steinebrei
>
> ########################################################################
>
> To unsubscribe from the CCPEM list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
>
########################################################################
To unsubscribe from the CCPEM list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
|