Hi,
> I tried to use relion_star_handler to copy ctf columns from 2nd file to
> 1st with the following commands,
This cannot be done with relion_star_handler.
--copy_column_from is to duplicate a column within a STAR file,
not to copy a column from another STAR file.
Best regards,
Takanori Nakane
On 2019/09/05 1:01, Li, Zhuang wrote:
> Hi RELION users,
> I have some problem adding additional column to a star file with
> relion_star_handler.
>
> I have 2 files to deal with,
> One is 1.star which is converted from cryosparc2 and only contain the
> _rlnImageName,
> The other is 2.star which is the normal relion output and contains ctf
> and aignment parameter.
> The 1.star is the subset of 2.star.
>
> I tried to use relion_star_handler to copy ctf columns from 2nd file to
> 1st with the following commands,
> *relion_star_handler --i 1.star --o sub.star --add_column rlnDefocusU
> --copy_column_from 2.star*
> with error message:
> ERROR: The column specified in --add_column_from is not present in the
> input STAR file.
>
> Zhuang.
>
>
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