Hi,
It seems your job died while producing a plot.
> relion30b
Is this 3.0 beta? If so, please upgrade to the
latest version. Many bugs related to plots have
been fixed since then.
Best regards,
Takanori Nakane
On 2019/09/19 6:15, Jobichen Chacko wrote:
> Dear Takanori,
> I am getting the following error after running motioncorr. I used
> Relion's own implementation for this run. Used the following command
> `which relion_run_motioncorr_mpi` --i Import/job001/movies.star --o
> MotionCorr/job002/ --first_frame_sum 1 --last_frame_sum -1 --use_own
> --j 2 --bin_factor 1 --bfactor 150 --angpix 1.11 --voltage 300
> --dose_per_frame 30 --preexposure 0 --patch_x 1 --patch_y 1 --dose_weighting
> Thank you.
> Jobi
>
>
> [ubuntu:15088] *** Process received signal ***
> [ubuntu:15088] Signal: Aborted (6)
> [ubuntu:15088] Signal code: (-6)
> [ubuntu:15088] [ 0]
> /lib/x86_64-linux-gnu/libpthread.so.0(+0x11390)[0x7f332db75390]
> [ubuntu:15088] [ 1]
> /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x38)[0x7f332d094428]
> [ubuntu:15088] [ 2]
> /lib/x86_64-linux-gnu/libc.so.6(abort+0x16a)[0x7f332d09602a]
> [ubuntu:15088] [ 3]
> /lib/x86_64-linux-gnu/libc.so.6(+0x777ea)[0x7f332d0d67ea]
> [ubuntu:15088] [ 4]
> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f332d17815c]
> [ubuntu:15088] [ 5]
> /lib/x86_64-linux-gnu/libc.so.6(+0x117160)[0x7f332d176160]
> [ubuntu:15088] [ 6]
> /lib/x86_64-linux-gnu/libc.so.6(+0x1166c9)[0x7f332d1756c9]
> [ubuntu:15088] [ 7]
> /lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0x80)[0x7f332d0da6b0]
> [ubuntu:15088] [ 8]
> /lib/x86_64-linux-gnu/libc.so.6(+0x5225a)[0x7f332d0b125a]
> [ubuntu:15088] [ 9]
> /lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0x1f49)[0x7f332d0ae0b9]
> [ubuntu:15088] [10]
> /lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7f332d175754]
> [ubuntu:15088] [11]
> /lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7f332d1756ad]
> [ubuntu:15088] [12]
> /usr/local/relion30b/bin/relion_run_motioncorr_mpi(_ZN7CPlot2D23ComputeLabelTickSpacingEddPdS0_S0_iNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x3af)[0x48d05f]
> [ubuntu:15088] [13]
> /usr/local/relion30b/bin/relion_run_motioncorr_mpi(_ZN7CPlot2D20PrecomputeDimensionsEv+0x318)[0x48d748]
> [ubuntu:15088] [14]
> /usr/local/relion30b/bin/relion_run_motioncorr_mpi(_ZN7CPlot2D20OutputPostScriptPlotENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x4f)[0x48d9bf]
> [ubuntu:15088] [15]
> /usr/local/relion30b/bin/relion_run_motioncorr_mpi(_ZN16MotioncorrRunner35generateLogFilePDFAndWriteStarFilesEv+0x12d1)[0x433f31]
> [ubuntu:15088] [16]
> /usr/local/relion30b/bin/relion_run_motioncorr_mpi(_ZN19MotioncorrRunnerMpi3runEv+0x5c6)[0x4a3286]
> [ubuntu:15088] [17]
> /usr/local/relion30b/bin/relion_run_motioncorr_mpi(main+0x4e)[0x4216ee]
> [ubuntu:15088] [18]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f332d07f830]
> [ubuntu:15088] [19]
> /usr/local/relion30b/bin/relion_run_motioncorr_mpi(_start+0x29)[0x421db9]
> [ubuntu:15088] *** End of error message ***
>
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