Dear Anderson,
I wanted to launched multi-process palm jobs on a cluster with each 3
vertex-wise -evperdat, but I got some out of memory during "Doing maths
for -evperdat before model fitting". Is there any way to launch
consecutively jobs during this phase thereafter having multiple jobs in
parallel during the permutations which I think require less memory ?
Thanks,
Matthieu
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Permutation Analysis of Linear Models
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Running PALM alpha115 using MATLAB 9.5.0.944444 (R2018b) with the
following options:
-i rh.all.subjects.fwhm8.PET.av45_early.start1_dur2.cerebellum.All.mgh
-s rh.white.avg.area.mgh
-accel tail
-n 500
-nouncorrected
-m rh.cortex.mgh
-T
-tfce2D
-evperdat rh.all.subjects.fwhm8.PET.fdg.cerebellum.All.mgh 2 1
-evperdat rh.all.subjects.fwhm8.PET.av45_late.cerebellum.All.mgh 3 1
-evperdat rh.all.subjects.fwhm9.thickness.All.mgh 4 1
-d Design_palm_All_CorrPos_eAV45vsFDG_cov_lAV45_CT.csv
-t Contrasts_palm_CorrPos_eAV45vsFDG_cov_lAV45_CT.csv
-logp
-o palm.CorrPos_eAV45vsFDG_cov_lAV45_CT.rh.fdr0
Found FSL in /usr/local/SOFTS/FSL/fsl-6.0.0
Found FreeSurfer in /usr/local/SOFTS/FREESURFER/6.0.1/freesurfer
Loading surface 1/1:
/netapp/vol1_softs/FREESURFER/6.0.1/freesurfer/subjects/fsaverage/surf/rh.white
Reading input 1/1:
rh.all.subjects.fwhm8.PET.av45_early.start1_dur2.cerebellum.All.mgh
Reading EV per datum 1/3: rh.all.subjects.fwhm8.PET.fdg.cerebellum.All.mgh
Reading EV per datum 2/3:
rh.all.subjects.fwhm8.PET.av45_late.cerebellum.All.mgh
Reading EV per datum 3/3: rh.all.subjects.fwhm9.thickness.All.mgh
Reading design matrix and contrasts.
Elapsed time parsing inputs: ~ 13.7796 seconds.
Doing maths for -evperdat before model fitting: [Design 1/1, Contrast
1/1] (may take several minutes)
Error using palm_core
(/netapp/vol1_homeunix/mvanhoutte/Soft/palm-alpha115/palm_core.m:621)
Out of memory. Type "help memory" for your options.
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