Hi John,
I just found an error in the modified fslpython_environment.yml file
that I provided in that thread. I've attached a fixed version to this
email, which should work.
Alternately, if you would prefer to reinstall FSL from scratch, you
can work around the "pkg_resources.ContextualVersionConflict" error by
running this command (you may need to prefix it with sudo):
$FSLDIR/fslpython/bin/conda install -n fslpython -c conda-forge deprecation==1.*
Cheers,
Paul
On 03/07/2019, West, John D. <[log in to unmask]> wrote:
> Hi Mark.
>
> Thanks for this info. Does the 5.0.11 install from this method already have
> the patched eddy version included, or do we still need to patch manually
> afterwards?
>
> Also, there still seems to be some python issues as referenced in a previous
> email (see attached). Is there any fix coming for that in the near future?
> The one Paul provided doesn't seem to work. I should also mention that this
> issue is not tied to just 5.0.11 but 6.0.1 as well from what I can see.
>
> Thanks.
> -John
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library <[log in to unmask]> On Behalf Of Mark
> Grier
> Sent: Tuesday, July 2, 2019 12:58 PM
> To: [log in to unmask]
> Subject: [External] Re: [FSL] FSL 5.0.11 download
>
> This message was sent from a non-IU address. Please exercise caution when
> clicking links or opening attachments from external sources.
> -------
>
> Download the installer from the FSL website and instead of running the
> default command, run the following command:
>
> python fslinstaller.py -V 5.0.11
>
> It also has 5.0.10 if needed.
>
> ########################################################################
>
> To unsubscribe from the FSL list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>
> ########################################################################
>
> To unsubscribe from the FSL list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|