Attached the file this time
On 05/07/2019, paul mccarthy <[log in to unmask]> wrote:
> Hi John,
>
> I just found an error in the modified fslpython_environment.yml file
> that I provided in that thread. I've attached a fixed version to this
> email, which should work.
>
> Alternately, if you would prefer to reinstall FSL from scratch, you
> can work around the "pkg_resources.ContextualVersionConflict" error by
> running this command (you may need to prefix it with sudo):
>
> $FSLDIR/fslpython/bin/conda install -n fslpython -c conda-forge
> deprecation==1.*
>
> Cheers,
>
> Paul
>
> On 03/07/2019, West, John D. <[log in to unmask]> wrote:
>> Hi Mark.
>>
>> Thanks for this info. Does the 5.0.11 install from this method already
>> have
>> the patched eddy version included, or do we still need to patch manually
>> afterwards?
>>
>> Also, there still seems to be some python issues as referenced in a
>> previous
>> email (see attached). Is there any fix coming for that in the near
>> future?
>> The one Paul provided doesn't seem to work. I should also mention that
>> this
>> issue is not tied to just 5.0.11 but 6.0.1 as well from what I can see.
>>
>> Thanks.
>> -John
>>
>> -----Original Message-----
>> From: FSL - FMRIB's Software Library <[log in to unmask]> On Behalf Of
>> Mark
>> Grier
>> Sent: Tuesday, July 2, 2019 12:58 PM
>> To: [log in to unmask]
>> Subject: [External] Re: [FSL] FSL 5.0.11 download
>>
>> This message was sent from a non-IU address. Please exercise caution when
>> clicking links or opening attachments from external sources.
>> -------
>>
>> Download the installer from the FSL website and instead of running the
>> default command, run the following command:
>>
>> python fslinstaller.py -V 5.0.11
>>
>> It also has 5.0.10 if needed.
>>
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