Dear Vasudev,
This is a problem with the bet script and the -B option, which will be fixed in FSL6.0.2. For now if you edit the line in $FSLDIR/bin/bet reading:
if [ $skull ] ; then
to
if [ $skull -eq 1 ] ; then
Then your command should work.
Hope this helps,
Kind regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 22 Jul 2019, at 18:09, Dev vasu <[log in to unmask]> wrote:
>
> Dear FSL,
>
> When running fslvbm_1_bet -b -B -f 0.3 , i am encountering an warning message which states
>
> fslvbm_1_bet -b -B -f 0.3
> T1w_struc
> Could not find a supported file with prefix "T1w_struc_brain_tmp_unbiased_forskull_skull".
>
>
> Could you please let me know the problem with fslvbm_1_bet .
>
> Thanks
> Vasudev
>
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