Hi Mikael,
What is the command-line you are using to run FIX?
Are you running FIX on an analysis generated by FEAT/MELODIC, or have
you manually created the input directory?
And are you re-running FIX on the same input directory? FIX will store
additional files and save them into the input directory which you
provide. If you re-run FIX on a directory which it has already been
run on, these additional files may interfere with subsequent runs,
causing them to fail.
Cheers,
Paul
On 24/07/2019, Mikael Noven <[log in to unmask]> wrote:
> Dear Paul,
>
> Thank you very much for your reply. I am sorry for the delayed response but
> your answer made me progress in my debugging and I wanted to do the work
> before replying. I have now uploaded one of the files.
> I also ran some more tests with FAST and it didn't work (I must initially
> have tested it with some weird volume that did). The histogram looks weird
> with one huge peak with "nothing" following. This was probably due to an
> extra normalization step in the preprocessing. Sorry about this. I corrected
> by brain extracting again. Now, FAST works.
>
> However, features.csv is still not found. Related error message:
> "cp: cannot stat '<path>/fix/features.csv': No such file or directory"
>
> The logMatlab.txt in each fix-folder as well as the errorLog.txt states:
> "Error using horzcat
> Dimensions of matrices being concatenated are not consistent."
>
> No .RData-files are generated.
>
> Best,
> Mikael
>
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