Hi FSL experts,
I have a DTI dataset set up a while ago, unfortunately, the diffusion images are single-encoded, so I can't run topup with it.
1. Can I still run eddy via FDT gui? If so, are acquisition parameter file/index file compulsory in the case?
2. What should I input in 'Topup basename'? the nodif.nii.gz file or just leave it?
Thank you very much!
Jacqueline
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