And do they all have the same number of time points?
Cheers,
Paul
On 22/07/2019, paul mccarthy <[log in to unmask]> wrote:
> Howdy,
>
> My guess is that one of your input images may have the wrong
> dimensions. Has the functional data for all of your subjects been
> transformed into standard space?
>
> Paul
>
> On 21/07/2019, SAN <[log in to unmask]> wrote:
>> Hi,
>>
>> I've been running MELODIC but I was getting these errors for some reason,
>> and I'm not sure how to correct for it. It seemed to be running fine
>> until
>> the very last step of outputting group ICA .. any insight on how I could
>> fix
>> this error?
>>
>> first error message:
>> /Users/sondosayyash/abin/fsl/bin/fsl_sub -T 180 -l logs -N feat4_gica -j
>> 1319,2452,3579,4703,5857,6982,8129,9253,10377,11506,12632,13772,14896,16026,17155,18282,19410,20537,21664,22791,23923,25048,26181,27325,28472,29598,30725,31849,32973,34098,35256,36378,37507,38630,39762,40889,42012,43135,44259,45383,46506,47630,48755,49879,51003,52129,53254,54380,55504,56626,57752,58878,60007,62595,63723,65062
>> /Users/sondosayyash/abin/fsl/bin/feat
>> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica/design.fsf -D
>> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica -gica
>> child killed: SIGABRT
>> while executing
>> "if { [ catch {
>>
>> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
>> switch -- [ lindex $argv $argindex ] {
>>
>> -I {
>> incr arginde..."
>> (file "/Users/sondosayyash/abin/fsl/bin/feat" line 312)
>>
>> FATAL ERROR ENCOUNTERED:
>> COMMAND:
>> /Users/sondosayyash/abin/fsl/bin/fsl_sub -T 180 -l logs -N feat4_gica -j
>> 1319,2452,3579,4703,5857,6982,8129,9253,10377,11506,12632,13772,14896,16026,17155,18282,19410,20537,21664,22791,23923,25048,26181,27325,28472,29598,30725,31849,32973,34098,35256,36378,37507,38630,39762,40889,42012,43135,44259,45383,46506,47630,48755,49879,51003,52129,53254,54380,55504,56626,57752,58878,60007,62595,63723,65062
>> /Users/sondosayyash/abin/fsl/bin/feat
>> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica/design.fsf -D
>> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica -gica
>> ERROR MESSAGE:
>> child process exited abnormally
>> END OF ERROR MESSAGE
>> child killed: SIGABRT
>> while executing
>> "if { [ catch {
>>
>> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
>> switch -- [ lindex $argv $argindex ] {
>>
>> -I {
>> incr arginde..."
>> (file "/Users/sondosayyash/abin/fsl/bin/feat" line 312)
>> Error encountered while running in main feat script, halting.
>> child killed: SIGABRT
>>
>> *************************
>> second error message:
>>
>> Melodic Version 3.15
>>
>> Melodic results will be in groupmelodic.ica
>>
>> Create mask ... done
>> Randomising input file order
>> Reading data file
>> /Volumes/Sondos_Drive/MAVAN_DATA/NONMAVAN_subj/exam_2173/PreprocessAFNI/exam_2173_results/final_epi_vr_base_MELODIC.ica/reg_standard/filtered_func_data
>> ... done
>> Estimating data smoothness ... done
>> Removing mean image ... done
>> Normalising by voxel-wise variance ...
>> error: Mat::operator(): index out of bounds
>>
>> libc++abi.dylib: terminating with uncaught exception of type
>> std::logic_error: Mat::operator(): index out of bounds
>>
>> FATAL ERROR ENCOUNTERED:
>> COMMAND:
>> /Users/sondosayyash/abin/fsl/bin/melodic -i .filelist -o groupmelodic.ica
>> -v
>> --nobet --bgthreshold=10 --tr=3.000000 --report
>> --guireport=../../report.html --bgimage=bg_image -d 25 --mmthresh=0
>> --Ostats
>> --sep_vn
>> ERROR MESSAGE:
>> child killed: SIGABRT
>> END OF ERROR MESSAGE
>>
>> ########################################################################
>>
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