Howdy,
My guess is that one of your input images may have the wrong
dimensions. Has the functional data for all of your subjects been
transformed into standard space?
Paul
On 21/07/2019, SAN <[log in to unmask]> wrote:
> Hi,
>
> I've been running MELODIC but I was getting these errors for some reason,
> and I'm not sure how to correct for it. It seemed to be running fine until
> the very last step of outputting group ICA .. any insight on how I could fix
> this error?
>
> first error message:
> /Users/sondosayyash/abin/fsl/bin/fsl_sub -T 180 -l logs -N feat4_gica -j
> 1319,2452,3579,4703,5857,6982,8129,9253,10377,11506,12632,13772,14896,16026,17155,18282,19410,20537,21664,22791,23923,25048,26181,27325,28472,29598,30725,31849,32973,34098,35256,36378,37507,38630,39762,40889,42012,43135,44259,45383,46506,47630,48755,49879,51003,52129,53254,54380,55504,56626,57752,58878,60007,62595,63723,65062
> /Users/sondosayyash/abin/fsl/bin/feat
> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica/design.fsf -D
> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica -gica
> child killed: SIGABRT
> while executing
> "if { [ catch {
>
> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
> switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr arginde..."
> (file "/Users/sondosayyash/abin/fsl/bin/feat" line 312)
>
> FATAL ERROR ENCOUNTERED:
> COMMAND:
> /Users/sondosayyash/abin/fsl/bin/fsl_sub -T 180 -l logs -N feat4_gica -j
> 1319,2452,3579,4703,5857,6982,8129,9253,10377,11506,12632,13772,14896,16026,17155,18282,19410,20537,21664,22791,23923,25048,26181,27325,28472,29598,30725,31849,32973,34098,35256,36378,37507,38630,39762,40889,42012,43135,44259,45383,46506,47630,48755,49879,51003,52129,53254,54380,55504,56626,57752,58878,60007,62595,63723,65062
> /Users/sondosayyash/abin/fsl/bin/feat
> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica/design.fsf -D
> /Users/sondosayyash/Downloads/MAVAN_STUDY/MELODIC.gica -gica
> ERROR MESSAGE:
> child process exited abnormally
> END OF ERROR MESSAGE
> child killed: SIGABRT
> while executing
> "if { [ catch {
>
> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
> switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr arginde..."
> (file "/Users/sondosayyash/abin/fsl/bin/feat" line 312)
> Error encountered while running in main feat script, halting.
> child killed: SIGABRT
>
> *************************
> second error message:
>
> Melodic Version 3.15
>
> Melodic results will be in groupmelodic.ica
>
> Create mask ... done
> Randomising input file order
> Reading data file
> /Volumes/Sondos_Drive/MAVAN_DATA/NONMAVAN_subj/exam_2173/PreprocessAFNI/exam_2173_results/final_epi_vr_base_MELODIC.ica/reg_standard/filtered_func_data
> ... done
> Estimating data smoothness ... done
> Removing mean image ... done
> Normalising by voxel-wise variance ...
> error: Mat::operator(): index out of bounds
>
> libc++abi.dylib: terminating with uncaught exception of type
> std::logic_error: Mat::operator(): index out of bounds
>
> FATAL ERROR ENCOUNTERED:
> COMMAND:
> /Users/sondosayyash/abin/fsl/bin/melodic -i .filelist -o groupmelodic.ica -v
> --nobet --bgthreshold=10 --tr=3.000000 --report
> --guireport=../../report.html --bgimage=bg_image -d 25 --mmthresh=0 --Ostats
> --sep_vn
> ERROR MESSAGE:
> child killed: SIGABRT
> END OF ERROR MESSAGE
>
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