Dear Paul,
Thank you very much for your reply. I am sorry for the delayed response but your answer made me progress in my debugging and I wanted to do the work before replying. I have now uploaded one of the files.
I also ran some more tests with FAST and it didn't work (I must initially have tested it with some weird volume that did). The histogram looks weird with one huge peak with "nothing" following. This was probably due to an extra normalization step in the preprocessing. Sorry about this. I corrected by brain extracting again. Now, FAST works.
However, features.csv is still not found. Related error message:
"cp: cannot stat '<path>/fix/features.csv': No such file or directory"
The logMatlab.txt in each fix-folder as well as the errorLog.txt states:
"Error using horzcat
Dimensions of matrices being concatenated are not consistent."
No .RData-files are generated.
Best,
Mikael
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