Hi Ishi,
Your group ICA results look fine; the time series and power spectra
plots are no longer generated as part of a group ICA report, because
group ICA uses an optimisation technique called MIGP which causes the
mixing matrix to no longer reflect the underlying component time
courses. Instead, you can use dual regression to get the time courses
for each subject.
I can run dual regression on your data without any problem at all -
what was output to the terminal when you ran it?
Cheers,
Paul
On 22/07/2019, Ishi Tandon <[log in to unmask]> wrote:
> Hi There,
> Somehow OxFile was taking longer time than usual. Here are the Google Drive
> links. This is the test data for 5 subjects. The same issue persists.
> https://drive.google.com/file/d/1A0RfmJhqktRJ1TUadxE9VFv_ajP_62RW/view?usp=sharing
>
>
>
> On Mon, Jul 22, 2019 at 7:56 AM Ishi Tandon <[log in to unmask]>
> wrote:
>
>> Sure i will do that in a while.
>> *Regards,*
>>
>> *Ishi Tandon*
>> *B.tech + M.tech - Cognitive & Neuroscience*
>> *Amity University, Rajasthan*
>> *contact - +918239259846 ; Email- [log in to unmask]
>> <[log in to unmask]>*
>>
>>
>> On Mon, Jul 22, 2019 at 1:18 PM paul mccarthy <[log in to unmask]>
>> wrote:
>>
>>> Hi Ishi,
>>>
>>> Would you be able to zip up the contents of your melodic and dual
>>> regression output directories and upload them to:
>>>
>>> https://oxfile.ox.ac.uk/oxfile/work/extBox?id=7594581385A6E05F08
>>>
>>> so I can take a look?
>>>
>>> Paul
>>>
>>> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote:
>>> > There were no errors or warnings displayed by either
>>> >
>>> > On Sun, Jul 21, 2019 at 5:32 PM paul mccarthy
>>> > <[log in to unmask]>
>>> > wrote:
>>> >
>>> >> Hi Ishi,
>>> >>
>>> >> Were any errors or warnings output by melodic or dual_regression?
>>> >>
>>> >> Paul
>>> >>
>>> >> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote:
>>> >> > Hi there
>>> >> > After running group Ica on 64 subject’s resting fmri data, I
>>> >> > didn’t
>>> >> > get
>>> >> the
>>> >> > power spectra and BOLD plots below the components in the report.
>>> After
>>> >> > running dual regression dr_stage_1, 2 and 3 files were not formed.
>>> >> > I am using FSL version 6.0.1. The same problem persisted in both
>>> ubuntu
>>> >> > 18.04 and macOS 10.14.5 Mojave.
>>> >> > Why is that happening?
>>> >> >
>>> >> >
>>> ########################################################################
>>> >> >
>>> >> > To unsubscribe from the FSL list, click the following link:
>>> >> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>>> >> >
>>> >>
>>> >>
>>> ########################################################################
>>> >>
>>> >> To unsubscribe from the FSL list, click the following link:
>>> >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>>> >>
>>> >
>>> > ########################################################################
>>> >
>>> > To unsubscribe from the FSL list, click the following link:
>>> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>>> >
>>>
>>> ########################################################################
>>>
>>> To unsubscribe from the FSL list, click the following link:
>>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>>>
>>
>
> ########################################################################
>
> To unsubscribe from the FSL list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|