Hi CCPEMers,
After I did the auto-refinement of masked local region, I tried to use the final run_data.star (without any further orientation alignment at all) file to relion_reconstruct a global map. However, even though I did not provide any mask at all, the global map contains the masked region only. I am wondering what is the correct way to build the global map in this case.
thank you very much for your help!
xiaodong
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