Hi,
> seems to not work with tif/tiff files
Please explain more. What happens when you try to process TIFF movies?
Where did your movies come from?
> -- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version
> "4.0.9")
> TIFF FOUND
This sounds OK. Version 4.0.9 supports BigTIFF so it should be able
to process any TIFF movies from SerialEM.
Best regards,
Takanori Nakane
> Dear All,
>
> Our relion3 compilation seems to not work with tif/tiff files. Below is
> the sum up of cmake-configuration:
>
> -- The C compiler identification is GNU 7.4.0
> -- The CXX compiler identification is GNU 7.4.0
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- BUILD TYPE set to the default type: 'Release'
> -- Using provided CUDA_ARCH=75
> -- CUDA enabled - Building CUDA-accelerated version of RELION
> -- Setting cpu precision to double
> -- Setting accelerated code precision to single
> -- Looking for pthread.h
> -- Looking for pthread.h - found
> -- Looking for pthread_create
> -- Looking for pthread_create - not found
> -- Looking for pthread_create in pthreads
> -- Looking for pthread_create in pthreads - not found
> -- Looking for pthread_create in pthread
> -- Looking for pthread_create in pthread - found
> -- Found Threads: TRUE
> -- Found CUDA: /usr/local/cuda (found version "10.0")
> -- Using cuda wrapper to compile....
> -- Cuda version is >= 7.5 and single-precision build, enable double usage
> warning.
> -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found
> version "3.1")
> -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so
> (found version "3.1")
> -- Found MPI: TRUE (found version "3.1")
> -- MPI_INCLUDE_PATH :
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-
> gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include
> -- MPI_LIBRARIES :
> /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so
> -- MPI_CXX_INCLUDE_PATH :
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-
> gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include
> -- MPI_CXX_LIBRARIES :
> /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so
> -- CMAKE_C_COMPILER : /usr/bin/cc
> -- CMAKE_CXX_COMPILER : /usr/bin/c++
> -- MPI_C_COMPILER : /usr/bin/mpicc
> -- MPI_CXX_COMPILER : /usr/bin/mpicxx
> -- CMAKE_CXX_COMPILER_ID : GNU
> -- CMAKE_C_COMPILER : /usr/bin/mpicc
> -- CMAKE_CXX_COMPILER : /usr/bin/mpicxx
> -- MPI_C_COMPILER : /usr/bin/mpicc
> -- MPI_CXX_COMPILER : /usr/bin/mpicxx
> -- Looking for XOpenDisplay in
> /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
> -- Looking for XOpenDisplay in
> /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -
> found
> -- Looking for gethostbyname
> -- Looking for gethostbyname - found
> -- Looking for connect
> -- Looking for connect - found
> -- Looking for remove
> -- Looking for remove - found
> -- Looking for shmat
> -- Looking for shmat - found
> -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so
> -- Found FLTK: fltk_images;fltk_forms;fltk
> -- X11 and FLTK were found
> -- FLTK_LIBRARIES:
> fltk_images;fltk_forms;fltk;/usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so;/usr/lib/x86_64-linux-gnu/libm.so
> -- Found FFTW
> -- FFTW_PATH: /usr/include
> -- FFTW_INCLUDES: /usr/include
> -- FFTW_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/libfftw3f.so;/usr/lib/x86_64-linux-gnu/libfftw3.so
> -- Looking for sincos
> -- Looking for sincos - found
> -- Looking for __sincos
> -- Looking for __sincos - not found
> -- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version
> "4.0.9")
> BUILD_SHARED_LIBS = OFF
> -- Building static libs (larger build size and binaries)
> Running apps/CMakeLists.txt...
> -- CMAKE_BINARY_DIR:/home/mjaciuk/git/relion/build
> TIFF FOUND
> -- Found OpenMP_C: -fopenmp (found version "4.5")
> -- Found OpenMP_CXX: -fopenmp (found version "4.5")
> -- Found OpenMP: TRUE (found version "4.5")
> OPENMP FOUND
> -- Configuring done
> -- Generating done
>
> Can you help us with solving this problem?
>
> Best regards,
> --
> Marcin Jaciuk, PhD
> **********************************
> Max Planck Research Group
> Malopolska Centre of Biotechnology
> Jagiellonian University
> 7a, Gronostajowa str
> 30-387 Krakow, Poland
> Office: +48 12 664 6332
> Laboratory: +48 12 664 6322
>
> ########################################################################
>
> To unsubscribe from the CCPEM list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
>
########################################################################
To unsubscribe from the CCPEM list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
|